Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00869 ATGCAGTTTAAATGTTTCAGTTGTTTTCTTTGTGAAAAAGAGCAACCAGAAATAGAGAATGTCAACAACAAGAAAAATAGGGACTATCCATGGGAAATATACACCTTGAAGGAGTTGCTTCGTGCAACAAACAATTTTCATCAAGATAACAAGATAGGAGAGGGTGGATTTGGAAGTGTTTATTGGGGTCGAACAAGTAAAGGCGTCGAGATCGCAGTGAAGCGCTTGAAGACTATGACTGCAAAGGCAGAGATGGAGTTTGCAGTTGAAGTGGAAGTACTAGGAAGAGTGAGGCATAAGAATTTGTTGGGCTTGCGTGGATTCTATGCTGGAGGTGATGAAAGGTTGATTGTCTATGATTACATGCCTAATCACAGTTTGCTCACCCATTTGCATGGTCAACTTGCCACGGATTGTTTGCTAGATTGGCCAACAAGAATGAGCATAGCAATTGGAGCAGCTGAAGGCTTAGTGTATTTGCACCATGAAGCAAATCCTCACATCATTCATAGGGACATAAAGGCAAGCAATGTTCTGTTAGATACTGAATTTCAAGCCAAGGTTGCTGATTTTGGTTTTGCTAAGTTAATACCAGAAGGTGTAAGCCATCTCACAACAAGGGTTAAAGGCACCCTTGGATATTTGGCGCCAGAGTATGCCATGTGGGGGAAGGTTTCTGGAAGCTGTGATGTTTACAGTTTTGGGATTTTGCTTTTGGAGATTGTGAGTGCCAAGAAACCAATTGAGAAACTCCCTGGCGGAGTGAAAAGGGATATAGTTCAATGGGTCACACCACATGTCCAAAAGGGTAACTTCATTCATATTGCTGATCCAAAGTTGAAGGGGCATTTTGATTTAGAGCAATTGAAATCTGTGGTCATGATAGCTATGAGGTGCACAGATAATAACCCAGAGAAGAGGCCTAGCATGACAGAAGTGGTGGAATGGCTCAAGGGTGACATAGGGAAGAGAAAAAAAGAGATTCCAAATTTGAGTTATAAGACTGGAGACGACAAATATGAGGAAAACTATGGAGAGATTAAACCAATGCAATCCAAGTTCAAAATACCAAGTGATAATGATAAACTTAAAATAAGATAA 1101 0.4069 MQFKCFSCFLCEKEQPEIENVNNKKNRDYPWEIYTLKELLRATNNFHQDNKIGEGGFGSVYWGRTSKGVEIAVKRLKTMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDYMPNHSLLTHLHGQLATDCLLDWPTRMSIAIGAAEGLVYLHHEANPHIIHRDIKASNVLLDTEFQAKVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSGSCDVYSFGILLLEIVSAKKPIEKLPGGVKRDIVQWVTPHVQKGNFIHIADPKLKGHFDLEQLKSVVMIAMRCTDNNPEKRPSMTEVVEWLKGDIGKRKKEIPNLSYKTGDDKYEENYGEIKPMQSKFKIPSDNDKLKIR 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00869 366 CDD STKc_IRAK 52 319 - -
Pumo3g00869 366 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00869 366 Pfam Protein kinase domain 46 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00869 366 FunFam PTI1-like tyrosine-protein kinase At3g15890 18 121 - -
Pumo3g00869 366 ProSiteProfiles Protein kinase domain profile. 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00869 366 FunFam PTI1-like tyrosine-protein kinase At3g15890 122 332 - -
Pumo3g00869 366 Gene3D Phosphorylase Kinase; domain 1 9 121 - -
Pumo3g00869 366 Gene3D Transferase(Phosphotransferase) domain 1 122 330 - -
Pumo3g00869 366 SUPERFAMILY Protein kinase-like (PK-like) 27 323 IPR011009 -
Pumo3g00869 366 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 4 323 - -
Pumo3g00869 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Pumo3g00869 366 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00869 Pumo-Chr3 13600243 13602358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00869 27 344 Receptor kinase-like Gene Family AT5G45780 42.073 5.57e-82 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Pumo3g00869 Pkinase 3.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00869 - - gmx:100817283 711.835