Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00868 ATGACCAGGCTTTGCACCAACTTTAGATCGCTCCTTCCTCTTGAATATATTAAGGGAAAGCGCTCAATTTCTGATCACATGCATGAGGGTACAAATTACATCAAGTACCTTCAAAATAAGATGAAACAGTTGCAAGCCAAGAGGGACAAGCTTATGAAGTTGTCTAATTTGAGTAGACCTGTTGGTTCTGATGAGAGTGGAAGCTTTACAAATCTTCCAATATGTGTCATTGTTCATCCTTGTCCAGGAGGTGTTCAGATTAAGTGTAGTTATAGCTTCAGAAAATATGTGTTTCCTTTGTCAAGAGTTATAGACATAGTGCTTAAAGAAGGGCTTGATGTGGTCAACTGTACTTCCACCAAAACAGATGACAGGTTCATACACACTATCCGATCAGAGGTTCCACATATGATGACTGGGACTAATTACACTGAACTGCAAAGGAAGCTTGTCGAAGCAATATCATCTTCAAGTTTGGAGGAGAGACTCTCTAAACCTGAAAACTGCTGA 510 0.398 MTRLCTNFRSLLPLEYIKGKRSISDHMHEGTNYIKYLQNKMKQLQAKRDKLMKLSNLSRPVGSDESGSFTNLPICVIVHPCPGGVQIKCSYSFRKYVFPLSRVIDIVLKEGLDVVNCTSTKTDDRFIHTIRSEVPHMMTGTNYTELQRKLVEAISSSSLEERLSKPENC 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00868 169 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 54 IPR036638 GO:0046983
Pumo3g00868 169 Coils Coil 34 57 - -
Pumo3g00868 169 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00868 Pumo-Chr3 13578503 13579803 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00868 1 151 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 38.462 2.15e-26 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00868 - - gmx:100803786 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00868 3 13578503 13579803 Pumo3g00868 3 13578503 13579803 ECH
Pumo6g02690 6 64323991 64324872 Pumo3g00868 3 13578503 13579803 PCT