Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00867 ATGGCCGAAGAGAATCAGCATATAATATTGGCTACATCGGACAATGATGAGAAGAAGATCATTCGTAGAGAAGTTGAAAAAAAAAGGAGGACACAAATGTCTATTCTAGGTGCATCTCTCCGGTCTTTACTCCCTTTTGAACTCATCAAGGGAAAGCGTTCGGCATCAGATCAGATAGGCGAGGCTGTAAATTATATCCAAATTTTAAAGCAAAAGATTAATGCTCTCCAAGTGAAGAGAGATAGACTCAAATTGATGGCTAATTCAAGTTTAGTTGAAACTGGAATTGATCAACCAGAACATTCAGGTGAAGAAGTGAAGTGTGTCAACATCAATCTCATTCCAGGGGGAGTGGAAATTGCCATATGTAGTGGCTTAGAGGAGGGTAGTTCACCTTTATCAGAGTTCATGGAAATATTGCTTCAAGAAGGATGTGATGTTGTTAGCTGTGTTTCCACCCTTGCTAATGGAAGGATATTCCATACTATTAAGTCTGAGGTGGAGGACTTGACACGCCTTGATCCTGCTAAGCTGCAACACAAACTGGATCATGCAATCTTGTTGCCAAGGTAA 573 0.4049 MAEENQHIILATSDNDEKKIIRREVEKKRRTQMSILGASLRSLLPFELIKGKRSASDQIGEAVNYIQILKQKINALQVKRDRLKLMANSSLVETGIDQPEHSGEEVKCVNINLIPGGVEIAICSGLEEGSSPLSEFMEILLQEGCDVVSCVSTLANGRIFHTIKSEVEDLTRLDPAKLQHKLDHAILLPR 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00867 190 Coils Coil 66 86 - -
Pumo3g00867 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 17 69 IPR011598 GO:0046983
Pumo3g00867 190 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 14 182 - -
Pumo3g00867 190 Gene3D - 10 95 IPR036638 GO:0046983
Pumo3g00867 190 Pfam Helix-loop-helix DNA-binding domain 22 69 IPR011598 GO:0046983
Pumo3g00867 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 87 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00867 Pumo-Chr3 13563132 13565595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00867 11 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 37.500 4.76e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo3g00867 HLH 0.00014 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00867 - - gmx:100776724 311.227