Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00866 ATGTTTCCTTTACAACGCGGCAATGAGCTGGTCATCCAGTTTTCTAATGGTCTCCACCCGCAACACAAAATCTCCCAAGATCTGATTCTGGATGATCACGATATCGACCAATCTCCCCTTGTCGCTTATTCCGATAAAAAATTGCGTACCAGCCGCCCTAAAAACCTATTTTATGAGCCTGGTTCCAGTCACGATAATTCTAACCAAGAAGAATATGCAAAAAAGATGGTTCATAGAGAGATTGAAAGGCAAAGGAGGCAAGAAATGGCTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTCACTTCATCAAGGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAATTACCTTCAGAAGAATATCAAGGAATTGAGTGACAAGAGGGATAAGCTGAAGAAGAAACTCTCCATAAATCCCAGCCCTGAAAGCCATGAGAACAAGCATGCATCTAGCGGTTTCACTGTCCACCAAAATAGTGGTGGAGCTGTGGGGATTGAAATCAGTGGATTCCGTGAGGAAGAGGTTCCACTTTCAAAATTGCTTGAACTAGTGTTAGAAGAGGGACTTGAAGTTGTTAGTTCTCTTACAACTAAAGTCAATGGTAGATTACTCCACAGTTTGCAGTGTGAGGTACGTAGTCCAGGGATTCTTGCCTTGTCATTATGTTTTACATTTTTTTTCTTGTGGAAAAAGTACATATATACTAATATTTTATATTTTTTCCCTTCAATTATTGATGAAATGGATTCACTGCAGGTTGACAATTCAGACAGTGTAGATCTATCTGAGCTGAGAAGGAAATTTTCCAATGTAATTCCATCACTTAGATGTTCTAAGTAA 864 0.3981 MFPLQRGNELVIQFSNGLHPQHKISQDLILDDHDIDQSPLVAYSDKKLRTSRPKNLFYEPGSSHDNSNQEEYAKKMVHREIERQRRQEMATLHASLRSLLPLHFIKGKRSISDQMNEAVNYINYLQKNIKELSDKRDKLKKKLSINPSPESHENKHASSGFTVHQNSGGAVGIEISGFREEEVPLSKLLELVLEEGLEVVSSLTTKVNGRLLHSLQCEVRSPGILALSLCFTFFFLWKKYIYTNILYFFPSIIDEMDSLQVDNSDSVDLSELRRKFSNVIPSLRCSK 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00866 287 Gene3D - 64 151 IPR036638 GO:0046983
Pumo3g00866 287 CDD bHLH_AtORG2_like 74 132 - -
Pumo3g00866 287 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 125 IPR011598 GO:0046983
Pumo3g00866 287 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 66 231 - -
Pumo3g00866 287 FunFam Transcription factor bHLH126 65 154 - -
Pumo3g00866 287 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 146 IPR036638 GO:0046983
Pumo3g00866 287 Coils Coil 122 142 - -
Pumo3g00866 287 SMART finulus 79 131 IPR011598 GO:0046983
Pumo3g00866 287 Pfam Helix-loop-helix DNA-binding domain 74 126 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00866 Pumo-Chr3 13548432 13552387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00866 78 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 45.198 6.02e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo3g00866 HLH 2.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00866 - - gmx:100775836 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00866 3 13548432 13552387 Pumo3g00866 3 13548432 13552387 ECH
Pumo6g02691 6 64368757 64370708 Pumo3g00866 3 13548432 13552387 PCT