Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00858 ATGCCTTCACTCTCTCTCTCTGACACTGACACCACCCTCAAAGCCAACAAGAAGAAAACCAAGAACCAATCCCTAACTGATCCCGCTATTGCTATTGCTGAGAAAACCTCCAAGCTCAACGCCCCCGATCCCGACCTCGATGGGGTTTCGGGGAAGAAGACCAAGAAGCGCAAGGCTTCAGATATAGAAGAGTCCATGCCCGCCAAACACGATGATGGGGACGACGAGACCAGTTCCGACCTCGTCGAACCCGAACCTTCTAGAGAAGACGACCATAGCAAGAAGAAGAAAAAGAAGAAAAAGGTCAAGTCCGAGGAACAGACTTTAGTAATGGAAGCAAAAGAAGAACAAAAGAAGGAGGATCCCAATGCGGTTTCCAATTTCAGGATATCGGAGCCCTTGAGGGAAAAATTGAAGGAGAAGGGAATCGAATCGCTGTTTCCCATTCAGGCCATGACCTTCGATACCGTTCTCGACGGTTCTGATTTGGTTGGTCGGGCTCGCACCGGTCAGGGTAAAACTCTGGCATTCGTGTTGCCCATATTAGAGTCTTTAATAAATGGTCCAGCAAAAGCTTCAAGAAAGATTGGCTATGGGAGGACTCCAAGTGTTCTTGTGCTCTTACCTACTAGGGAATTGGCTTGTCAGGTGCATGCTGATTTTGAAGTTTATGGTGGGGCGATGGGATTGAGCTCTTGTTGTTTATATGGCGGAGCTCCATACCAAGCTCAAGAAATTAAGCTTAGGAGAGGTGTTGATATTGTTATTGGTACACCAGGTCGCGTGAAGGATCATATTGAGAGGGGAAATATTGACCTCAGCCAAATAAAGTTTCGTGTCCTTGATGAAGCAGATGAAATGCTCAGGATGGGTTTTGTTGAAGATGTTGAACTGATTCTAGGTAAGGTAGAAAATGTTAATAAAGTTCAGACACTTCTGTTCAGTGCTACTTTGCCAGACTGGGTTAAGCATATTGCTGCAAAATTTTTGAAGCCAGATAAGAAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCTAGTACCAATGTTAGGCATATTGTTCTTCCTTGTACTGGTTCTGCCAGGGCCCAACTTATCCCAGACATTATTCGCTGTTATAGCAGTGGAGGCCGAACAATTATATTTACCGAGACAAAGGAGTCCGCTTCTCAGCTTGCAGGGACGTTGCCTGGAGCAAGAGCTCTCCATGGTGACATACAGCAAGCACAACGTGAGGTTACTCTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCTCGAGGTCTTGATATTAATGATGTTCAGTTAATTATCCAGTGTGAACCCCCACGGGATGTAGAAGCCTATATCCATCGTTCTGGGCGCACAGGAAGAGCAGGTAATAGTGGAGTTGCTGTTATGCTTTATGATCCAAAAAGATCGAATATATCTAAAATAGAAAGAGAATCCGGTGTAAAATTTGAACACGTATCTGCCCCTCAGCCTGATGATATTGCCAAAGCTGTTGGTGGGGAAGCTGCTGAAATGATTATCCAAGTGTCTGATAGTGTGATTCCTGCATTCAAGTCTGCTGCCGAAGAGCTTTTGAACAGTTCTGGTTTATCAGTTGTTGAATTACTTGCAAAGGCTCTTGCCAAGGCAGTTGGTTATACCGAAATAAAGCAGAGATCACTTCTCACTTCTATGGAGAACTATGTTACATTACTTCTTGAGATCGGGAAACCAATCTTCACCCCATCTTTTGCCTATGGAGTCTTGAGGAGATTCTTGCCTGAAGAGAAGGTTGAGGCTGTGAAAGGTCTTTCACTCACTGCTGATGGAAATGGTGTTGTTTTTGATGTACCAGCTGAAGATTTAGATACATATCTTAATGGTCAAGAAAATGCCTCGAATGTAAGTTTAGAGGTGTTGAAAGCATTGCCACGTTTGCAACAGAGAGATCAATCAAGAGGTGGGAGATTTGGTGATGGTGGTGGTCGAGGTGGGAACAGGTTTGGTGGAAGAGGCGGAGGCGGCAGGAATGGTAGATTTTCAAATGATAGATTTTCCAATGGTGGTGGAAGAGGAGGTCGTGGCGGCAACTGGGGTGGAAAGAGATGGTGA 2127 0.449 MPSLSLSDTDTTLKANKKKTKNQSLTDPAIAIAEKTSKLNAPDPDLDGVSGKKTKKRKASDIEESMPAKHDDGDDETSSDLVEPEPSREDDHSKKKKKKKKVKSEEQTLVMEAKEEQKKEDPNAVSNFRISEPLREKLKEKGIESLFPIQAMTFDTVLDGSDLVGRARTGQGKTLAFVLPILESLINGPAKASRKIGYGRTPSVLVLLPTRELACQVHADFEVYGGAMGLSSCCLYGGAPYQAQEIKLRRGVDIVIGTPGRVKDHIERGNIDLSQIKFRVLDEADEMLRMGFVEDVELILGKVENVNKVQTLLFSATLPDWVKHIAAKFLKPDKKTADLVGNTKMKASTNVRHIVLPCTGSARAQLIPDIIRCYSSGGRTIIFTETKESASQLAGTLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNSGVAVMLYDPKRSNISKIERESGVKFEHVSAPQPDDIAKAVGGEAAEMIIQVSDSVIPAFKSAAEELLNSSGLSVVELLAKALAKAVGYTEIKQRSLLTSMENYVTLLLEIGKPIFTPSFAYGVLRRFLPEEKVEAVKGLSLTADGNGVVFDVPAEDLDTYLNGQENASNVSLEVLKALPRLQQRDQSRGGRFGDGGGRGGNRFGGRGGGGRNGRFSNDRFSNGGGRGGRGGNWGGKRW 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00858 708 Gene3D - 575 646 - -
Pumo3g00858 708 SMART ultradead3 142 354 IPR014001 -
Pumo3g00858 708 MobiDBLite consensus disorder prediction 103 123 - -
Pumo3g00858 708 SUPERFAMILY RNA-binding domain, RBD 561 644 IPR035979 GO:0003676
Pumo3g00858 708 CDD DEADc 134 331 - -
Pumo3g00858 708 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 336 IPR014001 -
Pumo3g00858 708 MobiDBLite consensus disorder prediction 1 123 - -
Pumo3g00858 708 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 480 IPR027417 -
Pumo3g00858 708 FunFam DEAD-box ATP-dependent RNA helicase 7 574 646 - -
Pumo3g00858 708 MobiDBLite consensus disorder prediction 655 708 - -
Pumo3g00858 708 CDD GUCT_RH7_like 564 649 - -
Pumo3g00858 708 CDD SF2_C_DEAD 351 477 - -
Pumo3g00858 708 SMART helicmild6 391 468 IPR001650 -
Pumo3g00858 708 Gene3D - 73 336 IPR027417 -
Pumo3g00858 708 Pfam DEAD/DEAH box helicase 147 324 IPR011545 GO:0003676|GO:0005524
Pumo3g00858 708 Pfam GUCT (NUC152) domain 557 652 IPR012562 GO:0003723|GO:0004386|GO:0005524
Pumo3g00858 708 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 87 506 - -
Pumo3g00858 708 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 365 507 IPR001650 -
Pumo3g00858 708 MobiDBLite consensus disorder prediction 48 92 - -
Pumo3g00858 708 Gene3D - 352 574 IPR027417 -
Pumo3g00858 708 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 280 288 IPR000629 -
Pumo3g00858 708 Pfam Helicase conserved C-terminal domain 369 468 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00858 Pumo-Chr3 13423473 13428035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00858 160 504 Eukaryotic Initiation Factors Gene Family AT1G72730 30.571 3.34e-39 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00858 K16911 - gmx:100820207 1082.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00858 3 13423473 13428035 Pumo3g00858 3 13423473 13428035 ECH