Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00854 ATGGCTTGGTGCTGTTGTTCTATGCTGGCCGTCACAACTGGAAGTTTCTCATGTTTCCTTTGTTGCTCATGCTTTTGCTTCTTTCTCACACTTGCTTCCCCCTTCAGTGAAGAAGGACAAGCATTAATGGCGATGAAGGGTTCGTTCAGCAATATGGCAGACGTTCTCCTTGACTGGGATGACGCGCATAATGACGACTTTTGCTCTTGGCGTGGAGTTTTCTGCGATAATGTTAGCCTTACTGTGGTTTCTCTGAACCTGTCCAGCTTGAACCTTGGTGGAGAGATATCTCCAGCCATTGGTGACTTGGGAAACTTGCAATCCATAGACTTGCAATGGAATAAACTAACTGGGCAAATCCCAGATGAAATTGGAAACTGTGCAGCACTTGTTCATCTGGATTTGTCTGATAATCAGCTTTACGGTGATATACCTTTCTCCTTGTCAAAGTTGAAGCAACTTGAGTTTTTGAATTTAAAGAGTAATCAATTGACTGGTCCTATCCCTTCAACTTTAACCCAAATTCCAAACCTGAAGACTCTTGATCTTGCACGAAATAGGCTCACTGGAGAGATACCAAGACTACTCTATTGGAATGAAGTCTTACAGTACCTTGGGTTGCGTGGGAACATGTTGAGTGGTACTTTGTCCCCTGATATCTGTCAATTAACTGGTTTGTGGTATTTTGATGTGAGGGGCAATAATTTGACTGGTACTATACCTGACAGCATTGGGAACTGTACAAGTTTTGAAATCTTGGACATATCATATAATCAGATTACTGGGGAGATTCCATATAATATTGGATTTCTCCAAGTTGCTACTTTGTCACTTCAAGGAAATAGACTAACTGGGAAGATTCCAGAAGTGATTGGTTTAATGCAAGCCCTTGCAATATTGGATTTGAGTGAGAATGAGTTAGTGGGATCAATTCCCCCAATTCTTGGCAATCTGACTTTCACTGGCAAGCTGTACCTTCATGGAAACATGCTTACGGGTCCAATACCTCCTGAACTTGGCAATATGTCCAAACTGAGCTACCTGCAATTGAATGACAACCACTTAGTGGGTAACATTCCAAATGAATTTGGGAAGCTAGAACATCTTTTTGAATTGAATCTTGCCAATAATCATCTTGATGGAACTATCCCACATAACATAAGCTCATGCACTGCCTTGAATCAGTTTAATGTGCATGGTAATCAGTTAAGCGGTTCCATTCCATTGAGCTTCCGTAGCCTTGGGAGTTTGACATACTTAAACCTCTCTGCAAACAACTTCAAGGGGATTATACCAGTTGAGTTGGGGCATATCATCAATCTAGACACATTGGATCTATCTAGCAATAATTTTTCAGGGCATGTGCCAGCATCTGTTGGTTATCTAGAGCATCTCCTGACCTTGAACTTGAGTCATAACCACCTTGATGGTCCCTTGCCTGCTGAATTTGGGAATCTCAGAAGTATTCAGATTCTTGATTTGTCATTCAACAATCTGTCTGGTAGCATTCCTCCGGAAATTGGACAGCTGCAAAACCTTATGTCTCTGATTATGAACAACAATGATCTGCGTGGGAAGATTCCTGATCAGTTGACTAATTGTTTCAGTCTTACCTCACTAAATTTGTCCTATAATAACCTTTCTGGAGTAATTCCTTCAATGAAGAACTTCTCACGGTTTTCAGCTGACAGCTTCCTTGGAAATTCTTTATTATGTGGAGATTGGTTAGGATCAATATGTCGTCCTTATGTACCAAAATCCAGAGAGATTTTCTCTAGAGTTGCTGTTATATGCCTCACGCTTGGAATTATGATATTGTTGGCCATGGTAATTGTAGCGTTCTATAGATCCAGCCAATCAAAGCAATTGATGAAAGGATCCAGCAGAACTGGGCAAGGTCCTCCAAAACTAGTTATTCTTCACATGGATATGGCTATCCACACCTTGGATGATATAATGAGAGGTACTGAGAATCTCAATGAGAAATATATCATAGGGTATGGTGCCTCTAGCACTGTATACAAATGTGTTTTGAAGAATTCCCGACCAATTGCAATTAAGCGACTGTACAACCAACACCCACACAATTTAAGGGAGTTTGAGACCGAACTTGAAACAGTTGGTAGCATTAGACATAGAAATCTTGTCACCTTGCATGGATATGCTCTTACTCCCTATGGAAATCTCCTTTTCTATGACTATATGGCGAATGGCTCACTGTGGGATCTTCTACATGGTCCCTTGAAGGTAAAACTTGATTGGGAAACGCGCCTGAGGATTGCTGTTGGAGCAGCTGAAGGACTCGCATATCTCCATCATGACTGCAACCCGCGAATAGTTCACAGGGACATAAAGTCTTCAAATATTCTGCTGGATGAGAACTTTGAGGCTCATCTTTCTGATTTTGGCACTGCAAAATGTATCTCAACCACAAGAACTCATGCATCAACTTATGTCCTTGGAACTATAGGCTATATTGACCCTGAGTATGCCCGAACATCTAGGCTGAATGAAAAATCAGATGTATATAGCTTTGGCATAGTTCTGCTGGAGCTACTTACTGGGAAGAAGGCAGTGGACAATGAGTCTAATTTGCATCAATTGATATTGTCCAAGGCAGATAACAACACTGTAATGGAAGCTGTGGATCCAGAGGTCTCTATACCTGCATTGATCTGGCTCATGTGA 2688 0.4133 MAWCCCSMLAVTTGSFSCFLCCSCFCFFLTLASPFSEEGQALMAMKGSFSNMADVLLDWDDAHNDDFCSWRGVFCDNVSLTVVSLNLSSLNLGGEISPAIGDLGNLQSIDLQWNKLTGQIPDEIGNCAALVHLDLSDNQLYGDIPFSLSKLKQLEFLNLKSNQLTGPIPSTLTQIPNLKTLDLARNRLTGEIPRLLYWNEVLQYLGLRGNMLSGTLSPDICQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNRLTGKIPEVIGLMQALAILDLSENELVGSIPPILGNLTFTGKLYLHGNMLTGPIPPELGNMSKLSYLQLNDNHLVGNIPNEFGKLEHLFELNLANNHLDGTIPHNISSCTALNQFNVHGNQLSGSIPLSFRSLGSLTYLNLSANNFKGIIPVELGHIINLDTLDLSSNNFSGHVPASVGYLEHLLTLNLSHNHLDGPLPAEFGNLRSIQILDLSFNNLSGSIPPEIGQLQNLMSLIMNNNDLRGKIPDQLTNCFSLTSLNLSYNNLSGVIPSMKNFSRFSADSFLGNSLLCGDWLGSICRPYVPKSREIFSRVAVICLTLGIMILLAMVIVAFYRSSQSKQLMKGSSRTGQGPPKLVILHMDMAIHTLDDIMRGTENLNEKYIIGYGASSTVYKCVLKNSRPIAIKRLYNQHPHNLREFETELETVGSIRHRNLVTLHGYALTPYGNLLFYDYMANGSLWDLLHGPLKVKLDWETRLRIAVGAAEGLAYLHHDCNPRIVHRDIKSSNILLDENFEAHLSDFGTAKCISTTRTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNESNLHQLILSKADNNTVMEAVDPEVSIPALIWLM 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00854 895 Gene3D Transferase(Phosphotransferase) domain 1 735 892 - -
Pumo3g00854 895 Pfam Protein kinase domain 661 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00854 895 Gene3D Ribonuclease Inhibitor 313 583 IPR032675 -
Pumo3g00854 895 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 310 583 - -
Pumo3g00854 895 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 200 309 - -
Pumo3g00854 895 Pfam Leucine rich repeat 130 188 IPR001611 GO:0005515
Pumo3g00854 895 Pfam Leucine rich repeat 440 499 IPR001611 GO:0005515
Pumo3g00854 895 ProSiteProfiles Protein kinase domain profile. 659 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00854 895 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 35 199 - -
Pumo3g00854 895 Gene3D Phosphorylase Kinase; domain 1 624 734 - -
Pumo3g00854 895 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 21 114 - -
Pumo3g00854 895 SMART LRR_typ_2 342 365 IPR003591 -
Pumo3g00854 895 SMART LRR_typ_2 223 247 IPR003591 -
Pumo3g00854 895 SMART LRR_typ_2 414 437 IPR003591 -
Pumo3g00854 895 SMART LRR_typ_2 462 485 IPR003591 -
Pumo3g00854 895 SMART LRR_typ_2 103 127 IPR003591 -
Pumo3g00854 895 SMART LRR_typ_2 294 318 IPR003591 -
Pumo3g00854 895 SMART LRR_typ_2 175 199 IPR003591 -
Pumo3g00854 895 SMART LRR_typ_2 486 510 IPR003591 -
Pumo3g00854 895 SMART LRR_typ_2 151 174 IPR003591 -
Pumo3g00854 895 SMART LRR_typ_2 366 390 IPR003591 -
Pumo3g00854 895 SUPERFAMILY L domain-like 316 573 - -
Pumo3g00854 895 Gene3D Ribonuclease Inhibitor 198 312 IPR032675 -
Pumo3g00854 895 SUPERFAMILY L domain-like 37 329 - -
Pumo3g00854 895 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Pumo3g00854 895 ProSitePatterns Protein kinases ATP-binding region signature. 665 687 IPR017441 GO:0005524
Pumo3g00854 895 Pfam Leucine Rich Repeat 105 127 IPR001611 GO:0005515
Pumo3g00854 895 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 630 734 - -
Pumo3g00854 895 ProSiteProfiles Leucine-rich repeat profile. 177 199 IPR001611 GO:0005515
Pumo3g00854 895 SUPERFAMILY Protein kinase-like (PK-like) 637 878 IPR011009 -
Pumo3g00854 895 SMART serkin_6 659 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00854 895 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 735 892 - -
Pumo3g00854 895 Pfam Leucine Rich repeat 534 549 IPR001611 GO:0005515
Pumo3g00854 895 Pfam Leucine Rich repeat 246 263 IPR001611 GO:0005515
Pumo3g00854 895 Gene3D Ribonuclease Inhibitor 35 197 IPR032675 -
Pumo3g00854 895 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00854 Pumo-Chr3 13365874 13372875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00854 105 891 Receptor kinase-like Gene Family AT5G07180 80.203 0.0 1288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Pumo3g00854 Pkinase 7.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00854 K20718 - gmx:100811653 1622.45