Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00836 ATGAATCCTCATGGTCGAGTGAAGGAAGAGTTTCTCGGAGAAAGTTCTTCCTTTTGTGGTGGCTATGATCCGCAGCCAATAATGGTTGTTCCTCAACCAATTGAGGGGCTTCAAGAAACTGGTCCTCCACCATTCCTCACAAAAACATACGACATCGTTGATGACCCTTCCACAAACCATATTGTTTCCTGGAGCACAGGGAACAACAGCTTCATTGTGTGGGATCCACATGCCTTCTCCATAACCCTTCTCCCCAGATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCAGGCAACTCAACACCTATGGGTTTAAAAAGGTGGATCCAGATAAGTGGGAGTTTGCTAATGAGATGTTTCTTAGGGGGCAAAGGATTCTTTTGAAGAACATCAGAAGGAGGAAAGCAAATCATCAATCTCACGCGATGCAGCAAGGTGTAGAGCCTTGTGTTGAGGTGGGGCAGTTTCGATTAGATGGAGAAGTTGATCCGTTGAAGCGTGACAGGCAAGTTCTGATGGTGGAGTTGGTGAAACTCAGACAACAGCAACAAAGTACCAGAGCTCACCTTCAAGAAATGGAAGGAAGGCTTAAAAAGACTGAACAGAAACAGCAACAAATGATGAATTTCTTGGCCAGGGCAATGCAGAATCCCAACTTCGTGCAACAATTGGTTCAGCAAAAGGAGTGGAGAAAGGAGCTTGAGGAAGCTTTTTCCAAGAAGAGGAGGAGGCCTATTGATCAATGGCCTAGTAATGTTGTTGAAGTAGGTGAGTTAGGTTGTACAGAAGAGTCTTCAACTTTCGTTAAACTTGAACCACAGGAATTAGAGTTTGAGGTACCTGACTTGGACCTTGCTTTGAATCTTGAGGAGAATATTGAAAGCCAAAAGAGAATGGAGGAAGATCTTATTCAACTAGAAAGTAGAGATAAAGATATTGATGAAGTGTTTTGGCAAGATTTGCTTAAAGAGGGTATTGAAGATCAAGGTGTACTAGGTGTTGAAAATGTAGATGTATTGGCCAAGCAACTAGGTTATTTGGCCTCTAGTCCTAATTAA 1059 0.4268 MNPHGRVKEEFLGESSSFCGGYDPQPIMVVPQPIEGLQETGPPPFLTKTYDIVDDPSTNHIVSWSTGNNSFIVWDPHAFSITLLPRFFKHNNFSSFVRQLNTYGFKKVDPDKWEFANEMFLRGQRILLKNIRRRKANHQSHAMQQGVEPCVEVGQFRLDGEVDPLKRDRQVLMVELVKLRQQQQSTRAHLQEMEGRLKKTEQKQQQMMNFLARAMQNPNFVQQLVQQKEWRKELEEAFSKKRRRPIDQWPSNVVEVGELGCTEESSTFVKLEPQELEFEVPDLDLALNLEENIESQKRMEEDLIQLESRDKDIDEVFWQDLLKEGIEDQGVLGVENVDVLAKQLGYLASSPN 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00836 352 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g00836 352 SUPERFAMILY "Winged helix" DNA-binding domain 41 134 IPR036390 -
Pumo3g00836 352 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g00836 352 FunFam Heat shock transcription factor 1 38 135 - -
Pumo3g00836 352 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g00836 352 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g00836 352 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g00836 352 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g00836 352 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 31 244 IPR027725 -
Pumo3g00836 352 Coils Coil 286 309 - -
Pumo3g00836 352 Coils Coil 176 203 - -
Pumo3g00836 352 Gene3D - 37 135 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00836 Pumo-Chr3 13149486 13151066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00836 23 352 HSF AT3G22830 55.616 2.26e-127 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo3g00836 HSF_DNA-bind 4e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00836 K09419 - gmx:100809515 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02488 8 62038910 62042343 Pumo3g00836 3 13149486 13151066 PCT