Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00820 ATGGACACGCCAGATAGGAGCAAGATCAACACCCCTCTTTCCCAGTTTGAGGATTCGCCTGTATTTAACTATATCAGTAATCTATCTCCTATAGAGCCCGTTAAATCTGTTCACATTACTCAGACATTCAACTCATATAGCTTTTCATCCCCTCCATCTGTTTTCACATCACCCCATGTCAACTGTCACAAGGAATCCAGATTCCTCAGGAGGCATAACCTTTTGGAGACATCCAAACCTAAGGTTTCATCCGAAGATGTAAATAATGTTTATTCATGTGAAGAGACTCCTGCAGATTCAACTCAAGCATGTCATGAATCAAGTGAGCCACAGGAAAATACTGCTCAAAAGATTTCCATCGGAGATGCCTCAATTGAGCCATGTAACGAAAACCCTAATATCTCAACTGAGCTTCCACAAGTCTTAAAATATAATTTGGGTAGCCCTGGGTATGAACCTCTACTCTGTGGTGATGAGGCTAACTCTCTTTTGGAATTGCCTGGCAAGCTAGCATCAGATGTTGCCTATGTTCCAGAAGGCTCTGAAAAAGATTCCATTGAGGGTGAAATGCATCTTCCGGGATTATGTCAGATTGAGGAGGCAAAAATTGAAGGCCCAGATTGTGGTTTGGATGGTTTAATTACTGAAGCCTCTGATCTGTTAATGTTTAGCCCCCCAAATGTGACAGAAGCTTTTAAGGGTTTAAATAAACAATTAAATCCTTCAATAGAGCTTAGCAATTTTATGACTGTGTTACCACAATCTGCCACCAATGGCGGTCAACAAATGCACATTGGTAATGCAGTTGCTTCTGGTTCAGAACATGAAGTTGAAGATCATCCTTCTGAATCAGCAGCAACCACAGACACAGGTCAGAGACAGGACAATCTTGCCAATGTTGCTTTGGTGGCTAGCAATGCAAGTGAGAAAATGAATGATAAGCTTGTTTATGTGACACACCGTGGTATACGGAGACGCTGTCTAGATTTTGAGATGGCCATTGTGCAAAGGAAGAACCCAGCTGATAATTCAAACACCAACTCAAGTACAGCGAAATCTGATGAGAGGAATGTTGGTAATGAAAAGCAACTGCTTCCCACAAAACACAGTGGGGATTCACGGAGGTGTGTTTTGCCAGGAATTGGTTTGCACTTGAATGCACTTGCAAACTTAAAGGATTGCAAAAACATAAAAATTGAAAAGTTGTCATCTGGAAGGCAACCTAATCTGCCCAGCTCTCCTTCATCCGTGCACCTCTCCACAAGCCAAGAACATCAACTAGCATTGGTACCTGCATCAGTGGAAAGGGATTTGGAGCCATCAGAGAATGAGGTTCAGCCTGGTGAAGATTGTACCCAGTCATTGGTTCAGATGGCTGGTGAAGATTTCCAGCAGAATAGCCCGAAAAAGAAAAGGCGCAAGTTGGAATCAGCTGGGGAAGGGGAGTCTTGCAAGCGTTGTAATTGTAAGAAATCAAAATGTTTGAAGCTTTATTGTGAGTGCTTTGCTGCTGGAGTCTACTGCATAGAACCTTGTGCATGTCGCAATTGCTTCAATAAGCCTATTCATGTTGATACTGTTCTTCAAACTCGCCAGCAGATTGAGTCTCGTAATCCACTTGCATTTGCTCCTAAAGTCATACGAAGTTCTGATTCTGTATCTGAAATTGGGGATGACCCTAACAAAACTCCAGCTTCAGCACGACACAAAAGAGGATGTAATTGCAAGAAATCAAGCTGCCTAAAGAAATATTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCCATAAGCTGTAGATGTGAAGGATGCAAGAACACATATGGTAGAAAGGATGGTTCTATTCCTTCTGGATTAGAAGCTGAGCCCGAAGAAGAAACAGAAGCATGTGAAAAGGGTGTGGTGGAAAATGCTTCACAGAAAACTGAAACTCAGAATACTGAGGACCATCCAGACCATGCTCTTGCTACAACACCATTACCTCTTTCCAGATCATTGCTCCCATTACCCTTTTCATCAAAGGGTAAGCCACCAAGATCTTTTGTTACTACCATCTCCAGTTCTGGATTGTTTGTCAGCCAAAAGCTTGGGAAATCAAATGCTCCGCAGTCTCAACCTAAATGCGAAAAGCCTTTGCAAACTGTTCCAGATGATGACTCTCCTGTCACCTGCATCAAAACTTCTTCTCCCAATGGCAAGAGGATCTCCTCTCCTAATTGTGACGTGGGATCATCACCTACTCGCAGAGGTGGGAGGAAGTTGATATTACAATCTATCTCTTCATTTCCTTCTCTCACCCCTCACCATTAG 2307 0.4274 MDTPDRSKINTPLSQFEDSPVFNYISNLSPIEPVKSVHITQTFNSYSFSSPPSVFTSPHVNCHKESRFLRRHNLLETSKPKVSSEDVNNVYSCEETPADSTQACHESSEPQENTAQKISIGDASIEPCNENPNISTELPQVLKYNLGSPGYEPLLCGDEANSLLELPGKLASDVAYVPEGSEKDSIEGEMHLPGLCQIEEAKIEGPDCGLDGLITEASDLLMFSPPNVTEAFKGLNKQLNPSIELSNFMTVLPQSATNGGQQMHIGNAVASGSEHEVEDHPSESAATTDTGQRQDNLANVALVASNASEKMNDKLVYVTHRGIRRRCLDFEMAIVQRKNPADNSNTNSSTAKSDERNVGNEKQLLPTKHSGDSRRCVLPGIGLHLNALANLKDCKNIKIEKLSSGRQPNLPSSPSSVHLSTSQEHQLALVPASVERDLEPSENEVQPGEDCTQSLVQMAGEDFQQNSPKKKRRKLESAGEGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCACRNCFNKPIHVDTVLQTRQQIESRNPLAFAPKVIRSSDSVSEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNTYGRKDGSIPSGLEAEPEEETEACEKGVVENASQKTETQNTEDHPDHALATTPLPLSRSLLPLPFSSKGKPPRSFVTTISSSGLFVSQKLGKSNAPQSQPKCEKPLQTVPDDDSPVTCIKTSSPNGKRISSPNCDVGSSPTRRGGRKLILQSISSFPSLTPHH 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00820 768 MobiDBLite consensus disorder prediction 695 709 - -
Pumo3g00820 768 ProSiteProfiles CRC domain profile. 483 608 IPR005172 -
Pumo3g00820 768 SMART CXC_2 568 609 IPR033467 -
Pumo3g00820 768 SMART CXC_2 482 523 IPR033467 -
Pumo3g00820 768 MobiDBLite consensus disorder prediction 339 354 - -
Pumo3g00820 768 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 767 IPR044522 GO:0003700
Pumo3g00820 768 MobiDBLite consensus disorder prediction 611 659 - -
Pumo3g00820 768 MobiDBLite consensus disorder prediction 339 372 - -
Pumo3g00820 768 MobiDBLite consensus disorder prediction 269 294 - -
Pumo3g00820 768 MobiDBLite consensus disorder prediction 719 743 - -
Pumo3g00820 768 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 571 606 IPR005172 -
Pumo3g00820 768 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 485 520 IPR005172 -
Pumo3g00820 768 MobiDBLite consensus disorder prediction 695 751 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00820 Pumo-Chr3 12966298 12972104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00820 16 768 CPP Transcription Factor Family AT4G14770 44.072 2.09e-157 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Pumo3g00820 TCR 2.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00820 - - gmx:100811662 1350.11