Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00816 ATGTTCTCTTCCACATATGACTCCAACCTTTTCCCTAACTTCCCTTCATCTTCTTACCCTATTCTTCCTTTTCTCATTGATCCTGAGAATGATTTTGCAAGCAACACCCTTCTTGATGACCCTCTTCTTGTTCCCTTCATACCCACCACACATGATCCTCCATTCCCTGAAGAAACTGTTGCCAATTTTGCAGTTGCTGACTGCACTGGCATGCTTGAACAGGATGCAGACACTACTAACTACGGTTCCCACTATGGTAGCATTTCCAATTTTCTGACCCAGAAACCAGCCATAGCCAAGAAAGACAGGCACAGCAAGATTCACACATCTCAGGGTTTGAGGGACAGGAGGGTGAGATTATCAAGCGAAATAGCCCGCAAGTTTTTTGATCTTCAGGACATGTTAGAGTTTGACAAACCAAGTAACACCCTCGAGTGGCTCTTCACAAAGTCTGAGAATGCAATCAAAGAACTAGCCAGAAGTAAGCATAGCGGCAGTAGTAGTGGGGGTGACAAGTGTTCTTGTGACCCTTCTGTGGATTCAAATAACAACAACAAATCATTGGTGGGTGATGGTTCTAAAGGGAGGAAGTTGAAATGGGCACAGAAGGATGATGTTTGTGTTCAGACCAAAAAGGAGTCAAGGGAAAGGGCAAGAGCAAGGGCAAGAGAAAGGACTTGTTACAAGATGTGTAGCAGTAGAAGGTTGCAGCAAGACTTTGATGAAAGGTGCCCTGCAACTGCAACTGCAACTGCAACTGCAACAAACACTCAAATGCTGCACCAATTGAGGTCATCCATTCAGCCTGAACCTCCTGAACCTGGTGCAAGATGGGTTCAGCCTTATAACCCTTATCTCATTCATAATGAAGCGCCAAGAGATGGATTTGACGTCATTGAAGAATCTATTATGATAAAAAGGAGCATGAACCAAAACCTTGTGAATGTGATCCCTAGGGATGAAAGTTTCAACAACAATAACAATATGTGCCCCTTATTACCCTATTCCACTCCAAACTGGGATACTAATGGGGCGGTTAATGGACGCTCCAACTTTTGTGGATTAGGCACCATGAATCTATCTACATGTTTCATGAACCCGTGTGGTTTTTTGGTTCAGATTTGTAGAGCTTCATTCAAATCTTTGGAAATTCTTGGGAGGAGTGCATCAATCAGAGTCGACACTAATGTGCTAGTTTTCGGTAAAATCTGA 1212 0.434 MFSSTYDSNLFPNFPSSSYPILPFLIDPENDFASNTLLDDPLLVPFIPTTHDPPFPEETVANFAVADCTGMLEQDADTTNYGSHYGSISNFLTQKPAIAKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSENAIKELARSKHSGSSSGGDKCSCDPSVDSNNNNKSLVGDGSKGRKLKWAQKDDVCVQTKKESRERARARARERTCYKMCSSRRLQQDFDERCPATATATATATNTQMLHQLRSSIQPEPPEPGARWVQPYNPYLIHNEAPRDGFDVIEESIMIKRSMNQNLVNVIPRDESFNNNNNMCPLLPYSTPNWDTNGAVNGRSNFCGLGTMNLSTCFMNPCGFLVQICRASFKSLEILGRSASIRVDTNVLVFGKI 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00816 403 ProSiteProfiles R domain profile. 212 229 IPR017888 -
Pumo3g00816 403 ProSiteProfiles TCP domain profile. 100 158 IPR017887 -
Pumo3g00816 403 Pfam TCP family transcription factor 99 232 IPR017887 -
Pumo3g00816 403 MobiDBLite consensus disorder prediction 160 190 - -
Pumo3g00816 403 MobiDBLite consensus disorder prediction 159 196 - -
Pumo3g00816 403 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 96 288 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00816 Pumo-Chr3 12880253 12881537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00816 98 231 TCP Transcription Factor Family AT1G67260 42.581 9.91e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pumo3g00816 TCP 3.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00816 - - aprc:113871835 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00816 3 12880253 12881537 Pumo6g02709 6 64920512 64922514 PCT