Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00793 ATGGTGCAAACCGTAGCTGCCAAAGTTACCTCACCTTCAGATCCTCAACCCATTTACAACTCTGTCTCCACAATATCAACTTTGTTGGGTTCTGACCCATCCCAGCTCGCTAAAATAAACTCCGTTTCCGTGAATGATACCTTTGAAACAAACAAGTTGGTGATTGTTCCGGTCAACTGTTCCTGTGCAGGTGAGTATTATCAAACAAACACATCCTATGTGTTCCAGAATACAGAAACTTACTTCTTGATTGCCAACAACACTTTTGAGGGCCTCACAACATGTCAAGCTTTGCAGCATCAAAACCACAACCCTGCAAATATATACCCCGGTAGAAGACTTTTGGTGCCTCTTAGATGTGCTTGTCCCACAAAGAACCAAACTGAGAAAGGCATCAGGTACCTCTTAAGTTACTTGGTAAATTGGGGTGATTCTGTTTCATTCATTAGTGAGAAATTTGGTGTCAACTTTATGACCACTCTTGAAGCTAATACCCTTACTTTGACACAAGCCACGATCTATCCCTTTACCACACTTCTAGTTCCCCTTCATGATAAGCCTTCAAGTTCTCAAACCGTTTCGCCAACTCGACGCACTCCACCACCCTCACCTCCCTCTTCTTATCATAGCTCAAACAAAACATGGGTGTATGTAGTTGTTGGAGTTGTTGTCTTAACATCAGTTCTCTGTGCTGTCATTTTCTTCACACGCTATCGCAAAAATAAAAACAAAGATGACTCAGTGGTAGTGTCCAAGAGTTTTGAGGCAATTGAGGAAAAACCACAAGTGAAAGTGAATGAAAAATTGTCTGAGATCATATCTGGCATAGCTCAATCATTCAAGGTGTACGGTTTTGAGGAACTGCAGCGTGCAACAGATAACTTTAGTCCTAGCAGCTGGATCAAAGGGTCTGTTTATCGCGGTGTGATTAATGGTGATTTGGCTGCAATTAAAAAGATAGAAGGAGATGTGTCAAAAGAGATAGAGATGCTGAACAAAATCAACCATTCCAATGTTATACGCCTTTCTGGGGTTAGCTTCCACGAGGGGCGTTGGTACCTTGTTTATGAGTATGCTACTAATGGATCCTTGAGTGAATGGATCTACTTCAACAACGTGGATGGGAAGTTTCTGAGTTGGACTCAGAGAATGCAAATTGCATTGGATGTGGCCACAGGACTTGACTATCTTCACAGTTTCACTTCTCCTCCTCATATCCACAAGGATATTAATAGCAGTAACATTCTTCTGGATGGTGATGTCAGGGGAAAGGTTGCGAACTTAAGCCTTGCTAGGAGTTTGGAAGGAGGGGATGATCAATTTCCTGCCACAAGGCACATTGTTGGGACAAGAGGCTACATGGCTCCAGAGTATTTGGAAAATGGTCTTGTGTCTACAAAGCTTGATGTGTATGCTTTTGGGGTACTGATGCTGGAAATGGTCACTGGAAAAGAGGTAGCTGCTATTTTAACTGAAGATGAGACAAAGTTGTCACATGTTTTAAGTGCCATACTTGGTGAGGAAAGTGGCAAGGAGAGGTTGAAAGAGTTTGTGGATCCCTCTATGGGAGAAAATTGTCCATTGGAACTTGCTATGTTTGTGATTGAAATGATTGATAATTGCATAAAGACAGATCCGGCAAGTCGCCCTAGTGTGCATGAGATTGTGCAATCTCTGTCAAGAACCCTGAACTCTTCACTGAGTTGGGAAAGGTCAATGAATGTCCCACGAAATTAA 1737 0.4231 MVQTVAAKVTSPSDPQPIYNSVSTISTLLGSDPSQLAKINSVSVNDTFETNKLVIVPVNCSCAGEYYQTNTSYVFQNTETYFLIANNTFEGLTTCQALQHQNHNPANIYPGRRLLVPLRCACPTKNQTEKGIRYLLSYLVNWGDSVSFISEKFGVNFMTTLEANTLTLTQATIYPFTTLLVPLHDKPSSSQTVSPTRRTPPPSPPSSYHSSNKTWVYVVVGVVVLTSVLCAVIFFTRYRKNKNKDDSVVVSKSFEAIEEKPQVKVNEKLSEIISGIAQSFKVYGFEELQRATDNFSPSSWIKGSVYRGVINGDLAAIKKIEGDVSKEIEMLNKINHSNVIRLSGVSFHEGRWYLVYEYATNGSLSEWIYFNNVDGKFLSWTQRMQIALDVATGLDYLHSFTSPPHIHKDINSSNILLDGDVRGKVANLSLARSLEGGDDQFPATRHIVGTRGYMAPEYLENGLVSTKLDVYAFGVLMLEMVTGKEVAAILTEDETKLSHVLSAILGEESGKERLKEFVDPSMGENCPLELAMFVIEMIDNCIKTDPASRPSVHEIVQSLSRTLNSSLSWERSMNVPRN 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00793 578 Gene3D Phosphorylase Kinase; domain 1 265 358 - -
Pumo3g00793 578 SUPERFAMILY Protein kinase-like (PK-like) 278 559 IPR011009 -
Pumo3g00793 578 Pfam Protein kinase domain 304 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00793 578 ProSiteProfiles Protein kinase domain profile. 291 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00793 578 Gene3D Transferase(Phosphotransferase) domain 1 360 574 - -
Pumo3g00793 578 MobiDBLite consensus disorder prediction 186 209 - -
Pumo3g00793 578 Pfam LysM domain 138 182 IPR018392 -
Pumo3g00793 578 FunFam PTI1-like tyrosine-protein kinase 3 359 573 - -
Pumo3g00793 578 Gene3D LysM domain 122 197 IPR036779 -
Pumo3g00793 578 SMART LysM_2 137 182 IPR018392 -
Pumo3g00793 578 SMART LysM_2 72 117 IPR018392 -
Pumo3g00793 578 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 16 571 - -
Pumo3g00793 578 ProSiteProfiles LysM domain profile. 136 181 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00793 Pumo-Chr3 12450154 12452381 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00793 17 572 Receptor kinase-like Gene Family AT2G23770 44.231 1.53e-150 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Pumo3g00793 Pkinase 1.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00793 - - gmx:100815842 1006.9