Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00756 ATGGAGCTTCAGAGGCGCCAAGATCAGAGCCTCTCCCAGCGGAAGGGCCAAAAGCGGAAGCACGACGAGGAACAGCACGAGGACCGGCAGATCTCGCCGGCGCCGCCCACCGCCGACGAGCGCGCCGCACTCCTCTCCGACGTCGCCGAACAGGTGAGCATCCTCGAGTCGACTTTCACCTGGAACGAAGCGGATCGATCCGCGGCCAAGCGCGCCGCTCACGCGCTCGCCGATCTCGCGAAGAATGAGGATGTGGTGAACGTGATTGTTGAAGGAGGCGCGATTCCAGGGTTGGTGAAGCATCTTCAGGCGCCGCCTCTGAGTGACCGTGTGCTGAAGCCATTGCCGTTCGAGCACGAGGTTGAGAAAGGGAGCGCTTTCGCACTAGGACTTCTTGCCGTCAAGCCAGAACATCAGCAGCTCATTGTTGACAGTGGTGCCTTAACACGTCTTGTTGATCTTTTGAAGAGGCACAGGAATGGCTTAACTTCTCATGCTATTAATAGTCTCATTCGTAGAGCTGCAGATGCTATAACTAATCTTGCTCATGAGAACAGCAGCATCAAAACCCGTGTCAGGGTGGAAGGTGGAATTCCACCACTTGTTCATTTGCTTGATTTCGCCGATGCAAAGGTGCAAAGAGCAGCTGCTGGTGCTCTGCGAACCCTGGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTTCCAACTTTGATTCTAATGCTATGTTCTGAAGATGCTGCTGTTCATTATGAAGCGGTTGGTGTGATTGGAAATTTAGTCCACTCTTCACCTAATATAAAGAAAGAAGTTCTTCTCGCTGGAGCTTTGCAGCCAGTTATTGGATTGCTTAGTTCCTGCTGTACTGAAAGCCAGAGAGAAGCAGCCTTGTTACTTGGACAATTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTCCGACCTTTGATAGAGATGCTTCAGTCTCCTGATGTACAACTCAGGGAAATGTCTGCTTTTGCATTGGGGAGATTGGCCCAGGACACACATAACCAGGCCGGTATTGCACACAATGGTGGCTTGGTGCCATTGCTCAAGCTTCTTGACTCGAAAAATGGGTCTTTGCAACACAATGCTGCTTTTGCTCTTTATGGTCTTGCAGATAATGAGGATAATGTGTCCGGTTTCATTAGGGTAGGTGGAGTTCAGAGACTGCAGGATGGAGAATTTATTGTTCAAGCAACTAAAGATTGTGTTGCCAAGACGTTGAAAAGATTAGAGGAGAAGATTCATGGCCGTGTGCTGAACCATTTGTTATATCTTATGCGAGTTTCAGAAAAGGGTTGTCAAAGACGAGTTGCTTTGGCTCTTGCGCATCTTTGCTCTGCAGATGATCAGAGAAAATTTTTATCGATCACTATGGTATGGATCTTCTTGCTAAAATGTCTTGAGTTGCTTATTGGGCTTCTTGGTTCATCTAGCTCTAAGCAGCAACTTGATGGTGCTGTGGCTTTATGCAAGTTGGCCAATAAAGCCTCAACCCTGTCTCCCGTGGATGCTGCTCCTCCTTCTCCAACACCACAGGAAATTATTGCATCCACAGTTTTAGGCAAACGATTTTATGCTCATAGAATTTGTCTTCTTGCATCATCAGATACATTTCGTGCAATGTTTGATGGTGGTTACAGGGAGAAGGAGGCAAGGGACATAGAGATTCCAAATATTAGATGGGAGGTTTTTGAGTTGATGATGAGATTTGTATATTGTGGATCAGTTGATGTCACTCTGGATATTGCTCAAGATCTTCTTCGAGCAGCCGATCAATATCTTTTGGATGGACTTAAGAGACTCTGTGAGTACACAATTGCACAGGATATATTGCTAGAGAATGTATCAAGTATGTATGAACTTTCAGAAGCCTTCAATGCAATATCATTGAGGCATGCATGCATCCTTTTTATCTTGGAGCAATTTGATAAATTGAGTTCAAGGCCAGGGCACTCTCTTCTGATTCAGCGTATAATACCAGAGATCCGCAATTACTTTGTTAAAGCTCTTACAAAGGCCAACTTTCATAACAACCGACTGTAG 2103 0.4608 MELQRRQDQSLSQRKGQKRKHDEEQHEDRQISPAPPTADERAALLSDVAEQVSILESTFTWNEADRSAAKRAAHALADLAKNEDVVNVIVEGGAIPGLVKHLQAPPLSDRVLKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALTRLVDLLKRHRNGLTSHAINSLIRRAADAITNLAHENSSIKTRVRVEGGIPPLVHLLDFADAKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLCSEDAAVHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCTESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSGFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKGCQRRVALALAHLCSADDQRKFLSITMVWIFLLKCLELLIGLLGSSSSKQQLDGAVALCKLANKASTLSPVDAAPPSPTPQEIIASTVLGKRFYAHRICLLASSDTFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFVYCGSVDVTLDIAQDLLRAADQYLLDGLKRLCEYTIAQDILLENVSSMYELSEAFNAISLRHACILFILEQFDKLSSRPGHSLLIQRIIPEIRNYFVKALTKANFHNNRL 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00756 700 SMART BTB_4 533 630 IPR000210 GO:0005515
Pumo3g00756 700 MobiDBLite consensus disorder prediction 1 37 - -
Pumo3g00756 700 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 405 IPR000225 GO:0005515
Pumo3g00756 700 Gene3D - 36 166 IPR011989 -
Pumo3g00756 700 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 231 IPR000225 GO:0005515
Pumo3g00756 700 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 196 IPR000225 GO:0005515
Pumo3g00756 700 Pfam Armadillo/beta-catenin-like repeat 311 350 IPR000225 GO:0005515
Pumo3g00756 700 Pfam Armadillo/beta-catenin-like repeat 227 266 IPR000225 GO:0005515
Pumo3g00756 700 Pfam Armadillo/beta-catenin-like repeat 192 224 IPR000225 GO:0005515
Pumo3g00756 700 ProSiteProfiles BTB domain profile. 532 600 IPR000210 GO:0005515
Pumo3g00756 700 MobiDBLite consensus disorder prediction 1 34 - -
Pumo3g00756 700 Pfam BTB/POZ domain 541 628 IPR000210 GO:0005515
Pumo3g00756 700 Gene3D Potassium Channel Kv1.1; Chain A 535 668 IPR011333 -
Pumo3g00756 700 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 694 IPR044282 -
Pumo3g00756 700 SUPERFAMILY ARM repeat 58 410 IPR016024 -
Pumo3g00756 700 SMART arm_5 227 267 IPR000225 GO:0005515
Pumo3g00756 700 SMART arm_5 269 309 IPR000225 GO:0005515
Pumo3g00756 700 SMART arm_5 352 392 IPR000225 GO:0005515
Pumo3g00756 700 SMART arm_5 135 183 IPR000225 GO:0005515
Pumo3g00756 700 SMART arm_5 185 225 IPR000225 GO:0005515
Pumo3g00756 700 SMART arm_5 311 351 IPR000225 GO:0005515
Pumo3g00756 700 SMART arm_5 82 134 IPR000225 GO:0005515
Pumo3g00756 700 Gene3D - 167 271 IPR011989 -
Pumo3g00756 700 SUPERFAMILY POZ domain 540 627 IPR011333 -
Pumo3g00756 700 Gene3D - 272 522 IPR011989 -
Pumo3g00756 700 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 364 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00756 Pumo-Chr3 12035576 12054694 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00756 108 464 U-box Gene Family AT1G23030 26.330 3.30e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pumo3g00756 BTB 4.3e-20 CL0033