Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00752 ATGAAGGTTCGGTCTGATGTCAGTTCTGAATACTGGCTCAATACTAAGTGTGCATATCCTGACAGGCAATTGTTTGATTGGGGCATGATGAGGTTGCGCCGTCCATTGTATGGTGTTGGAGATCCATTTGCCATGGATGCTGATGATCAATTAAGGAAGAAACGGGAGGCTGAGAGACTGTCAAGATTACAAGAAAAGGAGAAAAATCATATAGAGACTAGAACAAGAAAATTTTTTGCAGAAATACTCAATACTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTGTGAAGAGGAGAAAACAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGGCAACGGGCAACTCGGGCAGAGAAATTGAGATTCCAAGCCTTGAAGGCTGATGATCAAGAAGCCTACATGAGAATGGTGAAAGAGAGTAAGAATGAGAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTAGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACAACAAATATTCAAATGGTATTGAACCCTTGGAAGATTCCGAAGCTGATTTACTGGAGTCAGATGCTTCAAAGAATGGAGTTTCTAAGGAATCACCTCTTGATGAAGATATAGATATGGTAGATTCTGATCATAATGGTGATTCTAGTGATTTACTTGAAGGTCAGCGGCAATACAACTCTGCCATTCATTCAATTCAAGAAAAGGTTACTGAGCAACCGTCTATACTTCAAGGTGGAGAATTAAGAACATACCAGATAGAGGGGCTCCAATGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAGACAATACAAACAATTTCTCTGATAGCACATCTTATGGAACACAAGGGTGTTACTGGTCCCCACTTGATTGTTGCTCCAAAGGCTGTTCTGCCAAATTGGGTCAATGAATTCACAACATGGGCTCCTAGCATCACAGCTATTCTTTATGATGGACGGCTGGATGAGAGGAAAGCAATGAAGGAAGAGTTGTCAGGAGAGGGGAAATTTAATGTTCTATTAACGCACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCAATGGCACTACTTGATTGTGGATGAAGGACATCGGTTGAAAAATCATGAGTCTGCTCTGGCAAGAACCTTGGACAATGGATATCGCATCCAACGAAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAGTTGTGGTCTTTGCTTAATTTTCTCCTTCCAAACATTTTTAACTCAGTTCAGAATTTCGAGGACTGGTTTAACGCCCCCTTTGCAGACCGAGTTGATGTCTCTCTCACAGATGAGGAACAACTATTGATCATCCGGCGTCTGCATCAAGTAATAAGGCCCTTCATATTAAGAAGGAAAAAAGATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTTACTGATGTAGGCAGAGTTGGCTTGGACAATGGTTCTGGAAAATCAAAAAGTCTACAAAACTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTCTTCGTGGGAGATTATGATATGTATAGACGTAAGGAGGAGATTGTCAGAGCATCGGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACAGAGTCCTCCTTTTCTCACAAATGACTCGACTTATGGACACTCTCGAAGTCTATTTGCGACTTCATGATTTTAAGTATCTTAGACTTGATGGCTCAACAAAAACCGAGGAAAGAGGCAATCTTCTACGGAAATTTAATGCTCCTGACTCCCCGTACTTCATGTTTCTTTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAATTTACAAACAGCAGATACTGTTATAATCTTTGATAGCGATTGGAACCCGCAAATGGATCAACAAGCCGAGGACCGAGCACATCGCATTGGACAAAAAAAGGAAGTCAGGGTTTTTGTGTTGGTTAGTGTAGGATCAATTGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGGATTGATGCCAAAGTCATCCAGGCAGGACTTTTCAACACAACTTCAACAGCCCAGGACAGAAGAGAAATGTTAGAAGAGATTATGCGTAGAGGTACAAGCTCACTTGGGACAGATGTGCCTAGTGAGAGAGAAATTAACCGCCTTGCTGCCCGATCAGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAGAGAAGACAAAAGGAAAATTACAGATCTCGTCTCATGGAAGAGCATGAATTGCCAGATTGGGTGTATTCTCCAATGAACAAGGATGATAAGGCCAAAGATTTCAACAGTGGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTAAGTGATCTGCAATGGATGAAGGCTGTGGAGAACGGGGAAGACATATCAAAATTTTCAGGTAAAGGAAAAAGAAGAGACCACCACTCATCTGACAGCATTGCACAAGCCAGTGATAATACAGGAGCAGAAGAAAGTTTAGAGTTGAGGAGTGAAAGTGTTCCCATGGAAAATGAGCGAACAAGTGAAGATAGTTTACATGTGACCCCTCCCGCCAAGAGATTCAAGCCTGAAGGAACAAATTTCCTGAAACATACATACGAGGATGTTGGAAGTGGTTTGAATCACCACTTGTTATCATGGAATACTCACAAAAAGAAAAGGTCAAGCTTTCTTGGCCAAGGTTCATTATCTGATACTAGAGGGCATTCTTCAAATGGAAGAGCAAACTGGAACTGA 2868 0.4114 MKVRSDVSSEYWLNTKCAYPDRQLFDWGMMRLRRPLYGVGDPFAMDADDQLRKKREAERLSRLQEKEKNHIETRTRKFFAEILNTVREFQLQIQASVKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDNKYSNGIEPLEDSEADLLESDASKNGVSKESPLDEDIDMVDSDHNGDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRTYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLMEHKGVTGPHLIVAPKAVLPNWVNEFTTWAPSITAILYDGRLDERKAMKEELSGEGKFNVLLTHYDLIMRDKAFLKKIQWHYLIVDEGHRLKNHESALARTLDNGYRIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYRRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDTLEVYLRLHDFKYLRLDGSTKTEERGNLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPMNKDDKAKDFNSGVTGKRKRKEVVYADTLSDLQWMKAVENGEDISKFSGKGKRRDHHSSDSIAQASDNTGAEESLELRSESVPMENERTSEDSLHVTPPAKRFKPEGTNFLKHTYEDVGSGLNHHLLSWNTHKKKRSSFLGQGSLSDTRGHSSNGRANWN 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00752 955 SMART ultradead3 249 442 IPR014001 -
Pumo3g00752 955 Gene3D - 222 477 IPR038718 -
Pumo3g00752 955 MobiDBLite consensus disorder prediction 840 900 - -
Pumo3g00752 955 SMART helicmild6 593 677 IPR001650 -
Pumo3g00752 955 Pfam Helicase conserved C-terminal domain 564 677 IPR001650 -
Pumo3g00752 955 MobiDBLite consensus disorder prediction 935 955 - -
Pumo3g00752 955 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 731 IPR027417 -
Pumo3g00752 955 CDD SF2_C_SNF 555 688 - -
Pumo3g00752 955 Coils Coil 768 788 - -
Pumo3g00752 955 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 265 431 IPR014001 -
Pumo3g00752 955 MobiDBLite consensus disorder prediction 873 894 - -
Pumo3g00752 955 MobiDBLite consensus disorder prediction 193 224 - -
Pumo3g00752 955 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 567 734 IPR001650 -
Pumo3g00752 955 Pfam SNF2-related domain 256 544 IPR000330 GO:0005524|GO:0140658
Pumo3g00752 955 Pfam Snf2-ATP coupling, chromatin remodelling complex 771 830 IPR029295 GO:0042393
Pumo3g00752 955 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 478 IPR027417 -
Pumo3g00752 955 SMART SnAC_2 770 830 IPR029295 GO:0042393
Pumo3g00752 955 FunFam Probable ATP-dependent DNA helicase CHR12 484 783 - -
Pumo3g00752 955 MobiDBLite consensus disorder prediction 840 856 - -
Pumo3g00752 955 Gene3D - 484 784 IPR027417 -
Pumo3g00752 955 PANTHER SNF2/RAD54 HELICASE FAMILY 49 853 - -
Pumo3g00752 955 MobiDBLite consensus disorder prediction 200 222 - -
Pumo3g00752 955 FunFam Chromatin structure-remodeling complex protein SYD 244 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00752 Pumo-Chr3 11980424 11994952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00752 560 705 RAD5 or RAD16-like Gene Family AT5G43530 36.667 1.23e-20 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo3g00752 SNF2_N 9.6e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00752 - - gmx:100786280 1877.83