Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00743 ATGTTCTCCCAAAACCTGATTCTCCCTCCCGAAAACCCTAGACCCGCGGCGTTCGCTTCCAAACCCATGAGCAGTGAGATCGCAATCGCCGCGCAGAAGCCTCCGCCGTCGATTCTCGTTGGCCGCTTCAAGGCTCTCCTCAAGCAGCGCGACGACGAACTCAGAGTCGCCGCCGGCGTCCCCGTCCCGCCGCCGACCACAAACGAAATCGTCCAGATTTACGAACTCCTCTTGTCGGAACTCACCTGCAATTTGAAACCTATCATCACGGATCTCACAATCATCGCCGAACAGCAGAGGGAGCACGCCAAAGGCATCGCTGACGCAATTTGCGCTCGGATTCTCGAGGTGCCGGCAGATCAAAAGCTTCCTTCACTCTATCTGTTGGACAGTATTGTGAAGAATTTTGGGCAGGAATACATTAGATACTTCTCTTTACGTCTTCCAGAAGTTTTCTGTGAAGCATACAGGCAGGTTCAGCCTAGTTTGCATTCTGCTATGCGCCATCTTTTTGGTACTTGGTCAAAAGTCTTTCCACCTTCAGTCCTGCGCAAGATTGAAGCTGACTTGCAATTTTCTCAAGCAGTTAATACTCAATCATCCACCCTGAATCCTGTCAGGGCTTCTGAATCATCTCGACCAAATCATGGCATACATGTTAATCCGAAATACTTGCGGCAGTTGGAGCGCTCAACTGTGGATAGTGTTGGTGAAAAGTTGGATTCCTCAGGAAATGCCACTAATACAAACTTTGGCTTTGTAGCTAGTAAGACACATCAATTTTTATCAAGCAGTAGCAGGCTTGGAATATCCTTGTCATCCCCTTCAAGAATTGGAGTTGATAGGCCTTTGTCTGCATCTATAGATGAATATGCAGTGGACAATTCTGCTGTCAGATTAATTGAGAGAGACTCTCCGCATCCTGCTGTTGATTATGGAGTACCCAAAGCATTAGGTAGAGATGTGGATTTGAGTGAATGGCAGCGAAAGCAGTACTCTGGTGATGGTCGTAATCGATTTCCAAATTCTATTACATACAGCCTTAGTAATGGACATCAGCGTCAAAGTCCAAGAGCTTTAATTGATGCATATGGCAGTGATAAAAGCCAAGAAATTTCAAGCAGTAAGCCTTTGTTAGTTGAACGTCTGGATAGAAATGGTATAGACAAAGTGTTGTCAACATCATGGCAGAATACTGAAGAGGAGGAGTTTGACTGGGAAGATATGAGTCCGACCTTAATGGACCATAGTAGGAATAGCAGTTTATTGCCTTCAACTATTGGTCTCTCTAGGGAAAGGCCTGTCGTTGCAGCTAATGCAACTTTGTCAGAGCAAGATACCAGGAAAGGTTGGTCTAGTGGATCTCAGCTTCCTCCAGTAGATGATTCTTCTGCCATAGCAGAAGATGCATTTGCCTCTTCAGCTTTTCGTCGTGCACCCCCGGGTCAGGTACCTGGATTCCAAAATCAAATCAATCATGGCCTGGGCTCCTCTCAACCTCTTGATGCTTGGAAGATTTCTCATCATCCGTCGAACATTTTTAGTAATAGGGGGCAAGCAAGGAATCTTCTGATCCCTCCTATTGACAACATTCGCAATACAGATATCCCATATCGGGTTCGACCTGCAGTGTCGAGGATGGAAGCTCGCCCATCAGTGTTGCCAACACCTTTTGAAATGAGGCCTTCTGTAAATGTGAATGTCACTCGACCTCCCATCATAAATCCAATAACTCCGTTGCAAAAACATGTTAGGAGTCAGTTTGATGCAATAAATACCAGTAATCCTATTGTGAACCATGTTGTAAATAAATCTTCATTTATGCCAGAACAGTCATTTGACAGTGTTGACAAGAAGGATGCAAGGTTGCCTAATCAGCTTCCTGGACTAATTTCGTCCAACCATCAAAATCATGGGCAGGCACCACAACTACAGTATTTTCCATCTCAGGATCCATCATTGCAGGGACATGGTGCTTCTATAAGTACAGCCATGTCAAATCCATTACCAGTTATACCATTCCCTTTACCAGTCCAAAGTATTGCAAATAACCCTTTACATTTACAGGGTGGAGCACATCCACCGTTACCTCCAGGTCGCCCTCCTGCTCCATTTCAAATGATACCTCATCCAAATGCTGGTACATTTATGTCAAACCAACAGCCAACTGTTGGATATACTAATTTAATTAGTTCTCTAATGTCTCAAGGCGTGATCTCATTGGCTAACCAGCTGCCTGCACAGGATTCTGTTGGAACTGAGTTTAATCCAGATATTCTGAAGTTTCGTCATAAGTCTGCTGTCAATGCCTTATATGGTGATCTCCCTAGACAATGCACAACTTGTGGGCTCCGATTCAGATGCCAAGAGGAACACAGTAGTCATATGGATTGGCATGTGACTAAGAATCGGATGTCTAAAAGCCGTAAGCAGAAACCCTCTCGTAAGTGGTTTGTTAGTGACAGGATGTGGCTCAGTGGTGCAGAGGCATTGGGAACAGAATCAGTTCCAGGTTTTTTGCCAACAGAAACCATAGAAGAAAGGAAAGATCATGAAGAGTTAGCAGTGCCCGCAGAAGAAGACCAGAATACATGTGCATTATGTGGAGAGCCTTTTGATGAGTTTTACAGTGATGAAATGGAGGAATGGATGTATAGAGGAGCTGTATACCTCAATGCACCTACGGGAACAACAGCAGGCATGGATAGGTCACAGTTAGGCCCCATAATTCATGCTAAATGCAGATCAGACTCTAATTTGGCCCCGTCTGAAGATCTTGGGCTGGATGAAAAGGGTGCCGATGAAGAGGGTACCCAAAGGAAACGAATGCGGAGTTGA 2838 0.4514 MFSQNLILPPENPRPAAFASKPMSSEIAIAAQKPPPSILVGRFKALLKQRDDELRVAAGVPVPPPTTNEIVQIYELLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICARILEVPADQKLPSLYLLDSIVKNFGQEYIRYFSLRLPEVFCEAYRQVQPSLHSAMRHLFGTWSKVFPPSVLRKIEADLQFSQAVNTQSSTLNPVRASESSRPNHGIHVNPKYLRQLERSTVDSVGEKLDSSGNATNTNFGFVASKTHQFLSSSSRLGISLSSPSRIGVDRPLSASIDEYAVDNSAVRLIERDSPHPAVDYGVPKALGRDVDLSEWQRKQYSGDGRNRFPNSITYSLSNGHQRQSPRALIDAYGSDKSQEISSSKPLLVERLDRNGIDKVLSTSWQNTEEEEFDWEDMSPTLMDHSRNSSLLPSTIGLSRERPVVAANATLSEQDTRKGWSSGSQLPPVDDSSAIAEDAFASSAFRRAPPGQVPGFQNQINHGLGSSQPLDAWKISHHPSNIFSNRGQARNLLIPPIDNIRNTDIPYRVRPAVSRMEARPSVLPTPFEMRPSVNVNVTRPPIINPITPLQKHVRSQFDAINTSNPIVNHVVNKSSFMPEQSFDSVDKKDARLPNQLPGLISSNHQNHGQAPQLQYFPSQDPSLQGHGASISTAMSNPLPVIPFPLPVQSIANNPLHLQGGAHPPLPPGRPPAPFQMIPHPNAGTFMSNQQPTVGYTNLISSLMSQGVISLANQLPAQDSVGTEFNPDILKFRHKSAVNALYGDLPRQCTTCGLRFRCQEEHSSHMDWHVTKNRMSKSRKQKPSRKWFVSDRMWLSGAEALGTESVPGFLPTETIEERKDHEELAVPAEEDQNTCALCGEPFDEFYSDEMEEWMYRGAVYLNAPTGTTAGMDRSQLGPIIHAKCRSDSNLAPSEDLGLDEKGADEEGTQRKRMRS 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00743 945 MobiDBLite consensus disorder prediction 917 945 - -
Pumo3g00743 945 ProSitePatterns Zinc finger C2H2 type domain signature. 779 799 IPR013087 -
Pumo3g00743 945 ProSiteProfiles CID domain profile. 66 194 IPR006569 -
Pumo3g00743 945 Gene3D - 64 191 IPR008942 -
Pumo3g00743 945 FunFam polyadenylation and cleavage factor homolog 4 63 191 - -
Pumo3g00743 945 Pfam CID domain 85 185 IPR006569 -
Pumo3g00743 945 SUPERFAMILY ENTH/VHS domain 66 189 IPR008942 -
Pumo3g00743 945 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 61 933 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Pumo3g00743 945 CDD CID_Pcf11 74 191 IPR047415 -
Pumo3g00743 945 SMART 558neu5 69 191 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00743 Pumo-Chr3 11858972 11865673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00743 718 945 C2H2 Transcription Factor Family AT4G04885 67.105 2.68e-101 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00743 K14400 - gmx:100794796 1659.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00743 3 11858972 11865673 Pumo3g00743 3 11858972 11865673 ECH