Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00742 ATGGAGATGGAATCATTCTTCAAGGAGTGCCCTCACCCTGATGACAAGCAAAGGAAAGCGCTGGGCCGTGAGCTCGGGTTGGAGCCTTTGCAAATCAAGTTTTGGTTCCAAAACAAGCGCACCCAAGTGAAGTCTCAACAAGAACGCCATGAAAACAATCTTCTGAAGGTTGAGAATGACAAGCTTCGAGCAGAGAACATGAGGTACAAGGAGGCACTATCTAATGCTTCATGCCCTGGCTGTGGAGGCCCGGCTTCTCTTGGAGAAATGTCCTTTGACGAGCAGCAGTTGAGGATCGAGAATGCACGACTAAAAGACGAGATTGATAAGATGTCAGGACTTGCAGCCAAGTATGCTGGAAAATCTTCGAGTTCGTACTATAACATGCCATCTCAAAACCAGATGCCTTCGCGCTCGCTTGATCTCGGGGTTGGTAACTATGGAGCACAGGCTCAGGTTCAGGTTCAGGTTCAGGTTCAGGCTCAGGCTCAGGCTCAGGCTCCGCAAGCCATGGTGGGGGAATTGAATGATAACAATGACCCTCTTAGGGAAGTACTCCCACTTCCTACTGGTTTTGATAAAGACCTAATTGTGGAGATTGGAATCGTAGCAATGGAAGAACTAGCAAGGATGGCTCTGTCTGGAGAACCTTTGTGGGTCCCTGGCAGCTACGGCCTTGAGGTTTTAAACGAAGATGAATACCTGAGGAATTTCCCAAGGGGAATAGGTCCAACATTCTTGGGCGTAAGAACCGAAGCTTCACGGCAATCCGCTGTAGTCATCATGAATCATAATAAACTCGTTGAGATCCTTATGGATGTCGTGAGTATTACTCTTCCCAACTACTATCTCTCCTTTTTAGTCTTAATTTGTTTTCATCATGATATATTTATTATGTTTTTCACTGTCCTTCTTTGTACAATGTCAGCTGAGTTGCAGGTTCCTTCACCTCTTGTTCCTACTCGTGACAACTATTTCATCAGGTACTGTAAGAAGCACGAAGGAGAATCATGGGCGGTGGTTGATTTTTCCATGGATCATCTGCAACCTAGTGCAACCTCAAGAACCCGAAGACGACCCTCTGGTTGCATAATTCAAGAAGTGCCAAATGGTTACTCAAAGATCATTTGGGTGGAACAAGTAGAAGTTGATGACATCGAGGTGCATAATCTTTACAAAATTTTGGTTAAATCTGGCCTTGCATTTGGAGCTAAACGTTGGGTGGCAGCATTGGATAGACAATGCGAACGTCTTGCTAGTGCAATGGCCACCAACATACCCCAAGGGGCCCTTTGTGTGATAACAAGTCATGAGGGGCGGAGAAGTATGATGAAGCTGGCTGAAAGAATGGTATTGAGCTTTTGTAATGGTGTTGGTGCTTCAACTGCACATGCTTGGACACCACTATCTGTTGGTCTTGAAGATGTAAGGGTCATGACCCGAAAGAGTATGGATGATCCAGGCAGACCTCCCGGTATAGTGCTCAGTGCTGCTACTTCTCTGTGGCTCCCAGTTCCTGCAAGGAGAGTTTTCGACTTTCTTCGATCCGAAAACTCGAGAAATCAGTGGGACATTCTGTCCAATGGGGGTAGAGTTCACGAACTGGCACACATTGCCAATGGTAGAGATCCTGGCAATTGTGTATCTTTGCTTCGCGTGAATAATATGATGAGTTCCTGCCAAAGCAATAATATGCTGATACTTCAAGAGAGTTGCACTGATGCTACAGGCTCATATGTGGTTTATGCTCCTGTTGATTTACTTGCCATGAATGTTGTGTTGGGTGGTGGTAATCCAGATTATGTGGCCCTTCTCCCCTCGGGCTTTGCTGTTCTTCCTGATGGGCCTGGACTGAACGGAGGGCCCATATGTGAGGTTGGATCTGGAGGTTGTCTTCTGACAGTTGCATTTCAGATATTGGTTGATTCGGTTCCAACGGCAAAGCTCTCTGTTGGTTCGGTAACCACTGTTAACAATTTAATCAAGAGCACAGTTGGACGGATCCAAAATGCATTGTCGCTTGATAGCACCTAA 2034 0.4612 MEMESFFKECPHPDDKQRKALGRELGLEPLQIKFWFQNKRTQVKSQQERHENNLLKVENDKLRAENMRYKEALSNASCPGCGGPASLGEMSFDEQQLRIENARLKDEIDKMSGLAAKYAGKSSSSYYNMPSQNQMPSRSLDLGVGNYGAQAQVQVQVQVQAQAQAQAPQAMVGELNDNNDPLREVLPLPTGFDKDLIVEIGIVAMEELARMALSGEPLWVPGSYGLEVLNEDEYLRNFPRGIGPTFLGVRTEASRQSAVVIMNHNKLVEILMDVVSITLPNYYLSFLVLICFHHDIFIMFFTVLLCTMSAELQVPSPLVPTRDNYFIRYCKKHEGESWAVVDFSMDHLQPSATSRTRRRPSGCIIQEVPNGYSKIIWVEQVEVDDIEVHNLYKILVKSGLAFGAKRWVAALDRQCERLASAMATNIPQGALCVITSHEGRRSMMKLAERMVLSFCNGVGASTAHAWTPLSVGLEDVRVMTRKSMDDPGRPPGIVLSAATSLWLPVPARRVFDFLRSENSRNQWDILSNGGRVHELAHIANGRDPGNCVSLLRVNNMMSSCQSNNMLILQESCTDATGSYVVYAPVDLLAMNVVLGGGNPDYVALLPSGFAVLPDGPGLNGGPICEVGSGGCLLTVAFQILVDSVPTAKLSVGSVTTVNNLIKSTVGRIQNALSLDST 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00742 677 CDD homeodomain 2 47 IPR001356 GO:0003677
Pumo3g00742 677 SUPERFAMILY Homeodomain-like 2 54 IPR009057 -
Pumo3g00742 677 Coils Coil 40 72 - -
Pumo3g00742 677 SMART START_1 199 417 IPR002913 GO:0008289
Pumo3g00742 677 SUPERFAMILY Bet v1-like 438 670 - -
Pumo3g00742 677 Gene3D - 1 59 - -
Pumo3g00742 677 Gene3D - 303 418 IPR023393 -
Pumo3g00742 677 ProSiteProfiles 'Homeobox' domain profile. 1 46 IPR001356 GO:0003677
Pumo3g00742 677 Pfam START domain 204 417 IPR002913 GO:0008289
Pumo3g00742 677 CDD START_ArGLABRA2_like 194 416 - -
Pumo3g00742 677 ProSiteProfiles START domain profile. 190 420 IPR002913 GO:0008289
Pumo3g00742 677 SUPERFAMILY Bet v1-like 193 419 - -
Pumo3g00742 677 FunFam Homeobox-leucine zipper protein HDG1 1 62 - -
Pumo3g00742 677 Coils Coil 94 114 - -
Pumo3g00742 677 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 2 672 IPR042160 -
Pumo3g00742 677 Pfam Homeodomain 2 44 IPR001356 GO:0003677
Pumo3g00742 677 SMART HOX_1 1 50 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00742 Pumo-Chr3 11817498 11823168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00742 2 675 Homeobox Transcription Factor Family AT4G04890 65.939 0.0 886
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo3g00742 START 4.5e-42 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00742 K09338 - gmx:100793758 986.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00742 3 11817498 11823168 Pumo3g00742 3 11817498 11823168 ECH
Pumo3g00742 3 11817498 11823168 Pumo8g02570 8 62896370 62899916 ECH
Pumo8g02570 8 62896370 62899916 Pumo3g00742 3 11817498 11823168 PCT