LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g00728	ATGCAAAGCATGCATTCCAGCAACTTTTCACCGCTGCTACTCTCAATTCTCTTATCCCTCACATTCCTCAACCATACCGAAGCTGCTACACGTATATCTTACCCGCCACCACCTTACTATAACTGTTCAACCAACAGCACTTACGCACCCAATAGCACCTACCATACCAGCCTTCAAACTCTTTTGTCATGGCTTTCTTCCAATGCCACAACCACTGCCCAAATCTACAGCACCTCCGTTGCAGAAGGCAACACTTCCTCCAAAACTGTTTATGGCCTCTTTGTGTGCAGAATTGGAAATGGGGAAGCTAACTGTAAAGACTGTGTGATGAACTCAACCGTGTTGATCACAAAACTCTGTCCCTTGGCCAAAGAAGCCATACTTTGGGCTGAGAATTGCACCACGCGTTATTCTAATCGTTATTTCTTCACCACAGTGGAAGAGAGTCCTAAACTTAGCTTCATGAACGAGCAAGACTATGTGGGACAGGTTGGCCGCTTCAACAACATACTCTGGGATACCATGAACCATGTGAGAAATCGAACAGCAAGAGCTCGAGCTCCTATTGGCTCTATGAAGTATGGCGTCATGTCAGAGAACATCACAGCCAACCAAACGCTATATGCAGGGGGATGGTGCATCCCTTACCTTTCCTCGGAGAACTGCAGTTGGTGTCTCAGCGATGCCATAGCAGAAATTCCAACCTCCTGTTGCAGAGGAAAAATTGGAGGAAGAGTTGTTTACCCCAGTTGTGGTGTTAGATATGAATTATATCCATTTTACCAGCTACCCACTTCGGAGACATTGCCACACGTACCTAATACACTGGCTCCACTTCGCCCTTTGGCACCATCAGTTGTTATATTGGTGGTACTGTTATTCCTGAGTTGCAGCTGTTTTCTAAGCAGTAGACGGAGGAAGAATCACGAGACTATTCTCAAACAAAGATTTGGTGATGAAGTTGCTATTTTGGAATCCTTGTGGTTTGATTTAGACGAAATTGAATCTGCAACAAACAAGTTCGCTAAAGAAAATGAGATTGGAAAAGGTGGATTTGGAGAAGTTTATAAGGGTGTACTTTCCAATGGACAAGAGATAGCTGTGAAGAGGCTTTTGTTAAGCTCCGGACAAGGGGAAGTGGAATTTAAGAATGAGGTTCTTGTTATAGCTCAACTTCAACACAGAAATTTAGTCAAATTACTAGGATTTTGTTTGGATGGACAAGAAAAGATACTCATATATGAATATGTACATAACAAAAGTCTTGATTACTTTCTATTTGATCCCCAAAAGAGAAGGCAATTAAATTGGTTTATACGACACCAGATTATTAAAGGAATTGCTCGAGGAATTCTTTATCTCCATGAAGATTCCCGCCTTAAAATTATACACCGTGATCTTAAACCCAGTAACGTTTTGTTAGATAGTAACATGAATCCAAAAATCTCAGACTTTGGAATAGCAAGAATTGTTGCTGCTGATAATATGGAAGAAAATACACGTAGAATTGTCGGCACTTATGGATACATGTCTCCAGAATATGCAATGCGTGGCCAGTTTTCTGTAAAATCTGATGTGTATAGCTTTGGAGTCATGGTCCTAAGGATAATCAGTGGAAAAAAAAATGGTTCACCTTCTGTATCTGATAGTGTTAATGACATAAGGACGTATGCTTTGACCAAATGGAGAGAGGGAATGCCATTAGAACTATTGGATTCTGAATTGGAAGGATCATATTCTCAAAATGAAGCGATTAGATGCATTCATATTGGTTTATTGTGTGTACAGGAAGACCCCAGTGACAGACCTTCAATGGCAGAAGTCGTTTCTTTCCTCAATAATCCTTCAGTTGATTTGCCACTGCCTAATAAACAATATAGAGAGATGGAGGAAAATTTGGGCAAAAGTAGATTGGACTCTAGAAGTGATTCAAACTATGAATCAACCAATATAATGACAGTGAGTCAATTTTACCCTCGATAG	1983	0.408	MQSMHSSNFSPLLLSILLSLTFLNHTEAATRISYPPPPYYNCSTNSTYAPNSTYHTSLQTLLSWLSSNATTTAQIYSTSVAEGNTSSKTVYGLFVCRIGNGEANCKDCVMNSTVLITKLCPLAKEAILWAENCTTRYSNRYFFTTVEESPKLSFMNEQDYVGQVGRFNNILWDTMNHVRNRTARARAPIGSMKYGVMSENITANQTLYAGGWCIPYLSSENCSWCLSDAIAEIPTSCCRGKIGGRVVYPSCGVRYELYPFYQLPTSETLPHVPNTLAPLRPLAPSVVILVVLLFLSCSCFLSSRRRKNHETILKQRFGDEVAILESLWFDLDEIESATNKFAKENEIGKGGFGEVYKGVLSNGQEIAVKRLLLSSGQGEVEFKNEVLVIAQLQHRNLVKLLGFCLDGQEKILIYEYVHNKSLDYFLFDPQKRRQLNWFIRHQIIKGIARGILYLHEDSRLKIIHRDLKPSNVLLDSNMNPKISDFGIARIVAADNMEENTRRIVGTYGYMSPEYAMRGQFSVKSDVYSFGVMVLRIISGKKNGSPSVSDSVNDIRTYALTKWREGMPLELLDSELEGSYSQNEAIRCIHIGLLCVQEDPSDRPSMAEVVSFLNNPSVDLPLPNKQYREMEENLGKSRLDSRSDSNYESTNIMTVSQFYPR	660

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo3g00728	660	FunFam	cysteine-rich receptor-like protein kinase 10	417	619	-	-
	Pumo3g00728	660	SMART	serkin_6	341	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo3g00728	660	Pfam	Salt stress response/antifungal	163	258	IPR002902	-
	Pumo3g00728	660	Pfam	Salt stress response/antifungal	42	139	IPR002902	-
	Pumo3g00728	660	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	462	474	IPR008271	GO:0004672\|GO:0006468
	Pumo3g00728	660	Gene3D	Phosphorylase Kinase; domain 1	301	416	-	-
	Pumo3g00728	660	ProSitePatterns	Protein kinases ATP-binding region signature.	347	369	IPR017441	GO:0005524
	Pumo3g00728	660	ProSiteProfiles	Protein kinase domain profile.	341	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo3g00728	660	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	303	416	-	-
	Pumo3g00728	660	ProSiteProfiles	Gnk2-homologous domain profile.	148	260	IPR002902	-
	Pumo3g00728	660	Gene3D	Transferase(Phosphotransferase) domain 1	417	624	-	-
	Pumo3g00728	660	Gene3D	-	151	260	IPR038408	-
	Pumo3g00728	660	Gene3D	-	38	142	IPR038408	-
	Pumo3g00728	660	CDD	STKc_IRAK	347	614	-	-
	Pumo3g00728	660	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	40	655	-	-
	Pumo3g00728	660	SUPERFAMILY	Protein kinase-like (PK-like)	326	621	IPR011009	-
	Pumo3g00728	660	Pfam	Protein kinase domain	342	609	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo3g00728	660	ProSiteProfiles	Gnk2-homologous domain profile.	36	142	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g00728	Pumo-Chr3	11587580	11590266	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g00728	9	660	Receptor kinase-like Gene Family	AT4G05200	44.347	0.0	551

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pumo3g00728		Pkinase	6.6e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo3g00728	-		-	gmx:100793219	719.153