Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00726 ATGGCTTCGTATCTCAAATATGTCATACCCTTTATCTGTTTAATCTCCCTCAGTTTTACTGAGACTAGAGCACAGGGCCTTGGTTATCAGTACAGAGTTTGCTCACAAAACAGATTTGTTTCCAATAGCACCTACCAAAGGGACCTCAGAACCCTCTTCTCTTCCTTATCTTCTAAAGCCTCCAGCAATGTCGAATTCTTCAACAACACCGTCACGGGGACAAGTCCCTCGGACACAGTGTACGGACTATTCATGTGCAGGGGTGACATCCCCTCCGACCTATGTAATCAATGCGTCGGAAACGCAACCCAGCTACTATCCACTCACGAAAACTGCTCCTTGTCCAAAGCAGCGATCGTGTATTACGATGAGTGCATAGTTCGGTATTCCAACCGCTCTTTCTTCTCCAACGTAACCATGGTAGCTGGCTATGTCCTGTCGAACCCCACCAATATGACCAACCAAGAAAGCTTCAAGCTTTTACTGTATGACACCATGAATAAAACTGCGGATGATGCATCCAATTCACCTATTGGTGCTAAAAAGTTCGCCACAAGGGAAACAAACATAGATATATTTCAGAAGCTTTATTGTCTTGCTCAGTGCACACAAGACCTGTCACCCCAAGATTGCAGAAGCTGTCTGGATATTTTGATAAACTCGTATCTGCCAAGTTGTTGTGCAGGAACGCAGGGAGGAAGAGTTTATTTTCCCAACTGCATCGTCAGGTTTGAAATTTACCCTTTTTTTCGATCCCTTTCCTCGGCACCAACGCCAACACCGGCAGGACTCGTTCCTGCAGCCAAATCAGGAGAAAATAAAAAGGGTAGATCACGAACAATTATCTTAATTGTTGTCCCCATTGTTATTTTGGCGACTCTCATTATTTTATGCTACTATTTGCTAAGGAGAAGAGCAAGAAAGAGTCCTAAGATCCTTCTTAAAGAAAATTTTGGTGAAGAAAGTTCCATTATGGAAGGTTTGCAATTTGATTTGGCAACGATTAAAGTAGCAACAAATGATTTTTCACACGAGAATAAGATTGGAAAAGGTGGATTTGGAGAAGTTTATAAGGGAATTCTTTCTGATGGACGACATATAGCTGTTAAGAGACTTTCAACAAGTTCTAAACAAGGTTCAGCGGAATTTAAGAATGAGATTTTATTGATAGCCAAGTTACACCATAGAAATCTTGTGGCATTCATAGGTTTTTGCTTGGAAGAGCAAGAGAAGATTCTTATTTATGAATATGTGCCAAATCGTAGCCTCGACTACTTTTTATTTGGTACTCAACAACATAAGTTAAGCTGGTATGAGCGTTATAAAATTATAGGAGGGACTGCTTCAGGAATTCTTTATTTGCATGAATATTCTCGACTTAAAGTTATACACCGTGATCTTAAACCTAGTAATGTTCTATTAGATGAAAGTATGAACCCTAAAATATCAGATTTTGGCTTGGCTAGAATTTTTGATATAGATCAAAATCGTGCAGAAACTGACCGAATTGTTGGAACATATGGTTATATGTCTCCAGAATATGCAATGCTTGGACAATTTTCTGAGAAGTCAGATGTTTTTAGTTTTGGAATCATGGTTCTTGAGATCATTACTGGTAAAAAGAATGCAAATTCTTATGAATCACACCATGCTGACGAAGGCCTTATGACTTATGTTTGGGGACATTGGAAGAATCAAACACCATTGAGTATATTGGATCCAAATATGAAAGAAAATTATTTTCAAACTCAAGTTATTCGGTGCATTGAAATTGGTTTATTATGTGTTCAAGAAAATCCAAATGTTAGACCTACAATGGCAGAAGTTGTTTCATATCTTAATAATCAATCACTTGAATTGCCATCTCTCCAAGAACCAGCATTTTTCTTGCACGGAATAGATCAAAAAGTAGTTATGCAACAAGGATCAAATTCCAACACATCTGTGAACAGTTCCATGCCAACCTCTGTCAATGAAATGTCTATTAGTAGCCTTTATCTACGATAA 2007 0.3866 MASYLKYVIPFICLISLSFTETRAQGLGYQYRVCSQNRFVSNSTYQRDLRTLFSSLSSKASSNVEFFNNTVTGTSPSDTVYGLFMCRGDIPSDLCNQCVGNATQLLSTHENCSLSKAAIVYYDECIVRYSNRSFFSNVTMVAGYVLSNPTNMTNQESFKLLLYDTMNKTADDASNSPIGAKKFATRETNIDIFQKLYCLAQCTQDLSPQDCRSCLDILINSYLPSCCAGTQGGRVYFPNCIVRFEIYPFFRSLSSAPTPTPAGLVPAAKSGENKKGRSRTIILIVVPIVILATLIILCYYLLRRRARKSPKILLKENFGEESSIMEGLQFDLATIKVATNDFSHENKIGKGGFGEVYKGILSDGRHIAVKRLSTSSKQGSAEFKNEILLIAKLHHRNLVAFIGFCLEEQEKILIYEYVPNRSLDYFLFGTQQHKLSWYERYKIIGGTASGILYLHEYSRLKVIHRDLKPSNVLLDESMNPKISDFGLARIFDIDQNRAETDRIVGTYGYMSPEYAMLGQFSEKSDVFSFGIMVLEIITGKKNANSYESHHADEGLMTYVWGHWKNQTPLSILDPNMKENYFQTQVIRCIEIGLLCVQENPNVRPTMAEVVSYLNNQSLELPSLQEPAFFLHGIDQKVVMQQGSNSNTSVNSSMPTSVNEMSISSLYLR 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00726 668 Pfam Salt stress response/antifungal 150 246 IPR002902 -
Pumo3g00726 668 Pfam Salt stress response/antifungal 34 131 IPR002902 -
Pumo3g00726 668 Gene3D - 140 249 IPR038408 -
Pumo3g00726 668 Gene3D - 27 134 IPR038408 -
Pumo3g00726 668 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 34 664 - -
Pumo3g00726 668 ProSiteProfiles Gnk2-homologous domain profile. 27 134 IPR002902 -
Pumo3g00726 668 Gene3D Phosphorylase Kinase; domain 1 306 417 - -
Pumo3g00726 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Pumo3g00726 668 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 303 417 - -
Pumo3g00726 668 FunFam Cysteine-rich receptor-like protein kinase 25 142 249 - -
Pumo3g00726 668 FunFam cysteine-rich receptor-like protein kinase 10 418 620 - -
Pumo3g00726 668 SMART serkin_6 342 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00726 668 ProSiteProfiles Protein kinase domain profile. 342 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00726 668 Pfam Protein kinase domain 343 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00726 668 CDD STKc_IRAK 348 615 - -
Pumo3g00726 668 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 27 134 - -
Pumo3g00726 668 ProSiteProfiles Gnk2-homologous domain profile. 140 249 IPR002902 -
Pumo3g00726 668 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Pumo3g00726 668 Gene3D Transferase(Phosphotransferase) domain 1 418 623 - -
Pumo3g00726 668 SUPERFAMILY Protein kinase-like (PK-like) 325 647 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00726 Pumo-Chr3 11572363 11577128 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00726 1 668 Receptor kinase-like Gene Family AT4G05200 44.364 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo3g00726 Pkinase 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00726 - - vun:114191422 1068.53