Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00724 ATGAGTTGCACCAAAGAAGCAACGGTGCTTCCCAAGTTCGGATGCTTCCAAATTGGTGAAGAAAGTTCCATTCTAGAAGGGTTACAATTTGATTTGGCTACTATTAAAGTAGCAACGAATAACTTTTCACACGAGAATAAGATTGGAAAGGGTGGATTTGGAGAAGTTTATCAGGGCATTCTTCCTGATGGACGACATATAGCTGTTAAGAGACTTTCTACAAGTTCTAGACAAGGTTCAGTTGAGTTTAAGAATGAGATTTTATTGATAGCCAAGCTACAACATAGAAATCTTGTGGCATTCATAGGATTTTGCCTAGAAGAGCAAGAGAAGATTCTTATTTATGAATACGTGCCAAATCGTAGCCTCGATTACTTTTTATTTGATACTCAACAACAGAAGTTAAGTTGGAATGAGCGTTATAAAATTATAAGAGGGACTGCTCTAGGAATTCTTTATTTACATGATTATTCTCGACTTAAAGTTATACATCGTGATCTTAAACCTAGTAATGTTCTATTAGATGAAAGTATGAACCCTAAAATATCGGATTTCGGCTTGGCTAGAATTTTTGATATAGATCAAAATCGTGCAGAAACTGACCGAATTGTTGGAACATATGGTTATATGTCTCCAGAATATGCAATGCTTGGACAATTTTCTGAGAAATCAGATGTTTTTAGTTTTGGAATCATGGTTCTCGAGATTATTATAGGTAAAAAGAATGCAAATTCGTATGATTCACACCATGTTGATGAAGGCCTTATGACTTATGTTTGGAGACATTGGAAGAATGAAACACCATTAAGTATATTGGATCCAAGTATGAAAGAAAATTATTTTCCAACTGAAGTTATTCGGTGCATTGAAATTGGTTTATTATGTGTTCAAGAAAATCCAAATATTAGACCTACAATGGCAACAGTTGTTTCATGTCTTAATAATCACACACTTATATTGCCATCTCCTCAGGAACCAGCATTTTTCTTACATGGAATAGATAAAAAAGTAGTGATGCAGCCAGGATCAAGTTCCAGCGCATCTGTGAACAGTTCTATGCCATACTCTGTAAATGAAATGTCTACTAGTAACTTTTATCCACGATAA 1107 0.3478 MSCTKEATVLPKFGCFQIGEESSILEGLQFDLATIKVATNNFSHENKIGKGGFGEVYQGILPDGRHIAVKRLSTSSRQGSVEFKNEILLIAKLQHRNLVAFIGFCLEEQEKILIYEYVPNRSLDYFLFDTQQQKLSWNERYKIIRGTALGILYLHDYSRLKVIHRDLKPSNVLLDESMNPKISDFGLARIFDIDQNRAETDRIVGTYGYMSPEYAMLGQFSEKSDVFSFGIMVLEIIIGKKNANSYDSHHVDEGLMTYVWRHWKNETPLSILDPSMKENYFPTEVIRCIEIGLLCVQENPNIRPTMATVVSCLNNHTLILPSPQEPAFFLHGIDKKVVMQPGSSSSASVNSSMPYSVNEMSTSNFYPR 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00724 368 Gene3D Transferase(Phosphotransferase) domain 1 118 319 - -
Pumo3g00724 368 ProSitePatterns Protein kinases ATP-binding region signature. 48 70 IPR017441 GO:0005524
Pumo3g00724 368 SMART serkin_6 42 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00724 368 CDD STKc_IRAK 48 315 - -
Pumo3g00724 368 Pfam Protein kinase domain 43 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00724 368 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 6 117 - -
Pumo3g00724 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Pumo3g00724 368 FunFam cysteine-rich receptor-like protein kinase 10 118 320 - -
Pumo3g00724 368 ProSiteProfiles Protein kinase domain profile. 42 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00724 368 SUPERFAMILY Protein kinase-like (PK-like) 26 353 IPR011009 -
Pumo3g00724 368 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 28 363 - -
Pumo3g00724 368 Gene3D Phosphorylase Kinase; domain 1 17 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00724 Pumo-Chr3 11563188 11565090 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00724 28 368 Receptor kinase-like Gene Family AT3G45860 57.143 3.45e-137 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo3g00724 Pkinase 6.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00724 - - vun:114191422 568.54