LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g00723	ATGTGGTTACTCATATACCTTTTCTTTTTCGGCTTCTTCAATTTTTCCATAACAACCGAAGCCAATGACCTTCAGTATCTGAATCACAGTTGTTCAAGCAACAAAACCTTCACTCCAAACAGCAGCTACCAATCCAACCTCCAAACCCTCCTCACCTCCCTATCTTCCCATGCCACCACTGCACAATTCTTCAACACCACAACGGGTGGCGGAGACTCTGGCGAAACCATTTATGGCTCCTTCATGTGCCGTGGTGATGTCACCAACCAAACGTGCCAAGAATGCATTAAAACTGCAACCCAACAAATAGCCACAGTGTGTCCCCACTCCAAAGAGGCCTTAATCTGGTACCACGAATGTTTGGTTCGTTATTCCAACCGTTGTTTCTTCTCCACCGTGGACGAATGGCCTAGGTTCAACTTCGTGGATTATAACGTGACTACGAATTCAACAGAAGGAATCTATGGCTACTGGTTGCTATCCAAAACGTTGAGTGATGCAGTGGGTGAGGCTGCGAACGCTGGTCCCGCGGGCACCATGAAATTCGCAACAAAAAACGCTGCGGTGTATGGGTCTCAGAGAGTGTATACTCTTGTTCAGTGCACGCCGGATCTATCAAGCGAAGATTGTAGTAAGTGTTTGGGTGATATCATGAGCGATATTCCTTTGTGTTGCCTCGGAAGGAGAGGTGGAATGGTTCTATATCCCAGCTGCACTTTGATGTTTGGGATAGGACAGTTCTACATAGACGTTCATGGTACAAAAGAATCAGAACCTTCAGTTGGTCAGGAAAGTGTCACTCTAAAAGGGTTGCAATTTGATTTTGCAATAATTGAAGCAGCAACAAATAACTTTTCACATGAAAATAAGATTGGCAAAGGTGGATTTGGAGAAGTTTACAAGGGCACTCTTCCTAATGGACAACATGTAGCTGTCAAAAGACTATCAACAAGTTCATCACAAGATCCTCGACAAAAGAAGTTAAGCTGGTTTGAGCGTTACAAAATTATAGAAGGAACTGCACGAGGAATTCTTTATTTACATGAACATTCTCGCTTTAAAGTTATACATCGTGATCTTAAACCAAGTAATATTCTATTAGATGAAAATATGAATCCTAAGATATCAGATTTTGGTATGGCTAGAATTGTTGAAATGGATCAAGATCGTGGAAAAACCAAAAGAATTGTTGGAACATTTGGTTATATGTCTCCAGAATATGCAATATTTGGACATTTTTCTGAAAAATCAGATGCTTTTAGTTTTGGAGTCATGGTTTTAGAGATTATTACAGGAAAAAGGAATATAAATTCTCATGCATCTCACTATATGACAGATGGTCTCATGAGCTATGTTTGGAGACAATGGAGGGATCAAACACCATTGAACATATTGGATCCAATTTTGAAAGAAAGTTATTCTCAAATTGAAGTCATTAAATGTATTCAAATTGGTTTAATGTGTGTTCAACAAAATAAAAACAATAGACCTACTATGGCAAAAGTTGTTTCATATCTTGATGGTCACACACTTAAATTGCCATCTCCACAAGAACCAGCATTTTTCTCGCTGGACAAGATGGATCAAAATATAGCTACACAACATTTTTCTATTAATGAGATGTCTATAAGTACGTATTATGCTAGATAA	1650	0.3933	MWLLIYLFFFGFFNFSITTEANDLQYLNHSCSSNKTFTPNSSYQSNLQTLLTSLSSHATTAQFFNTTTGGGDSGETIYGSFMCRGDVTNQTCQECIKTATQQIATVCPHSKEALIWYHECLVRYSNRCFFSTVDEWPRFNFVDYNVTTNSTEGIYGYWLLSKTLSDAVGEAANAGPAGTMKFATKNAAVYGSQRVYTLVQCTPDLSSEDCSKCLGDIMSDIPLCCLGRRGGMVLYPSCTLMFGIGQFYIDVHGTKESEPSVGQESVTLKGLQFDFAIIEAATNNFSHENKIGKGGFGEVYKGTLPNGQHVAVKRLSTSSSQDPRQKKLSWFERYKIIEGTARGILYLHEHSRFKVIHRDLKPSNILLDENMNPKISDFGMARIVEMDQDRGKTKRIVGTFGYMSPEYAIFGHFSEKSDAFSFGVMVLEIITGKRNINSHASHYMTDGLMSYVWRQWRDQTPLNILDPILKESYSQIEVIKCIQIGLMCVQQNKNNRPTMAKVVSYLDGHTLKLPSPQEPAFFSLDKMDQNIATQHFSINEMSISTYYAR	549

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo3g00723	549	FunFam	Cysteine-rich receptor-like protein kinase 25 isoform A	141	247	-	-
	Pumo3g00723	549	Gene3D	Transferase(Phosphotransferase) domain 1	271	318	-	-
	Pumo3g00723	549	Gene3D	-	143	247	IPR038408	-
	Pumo3g00723	549	Gene3D	-	23	129	IPR038408	-
	Pumo3g00723	549	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	355	367	IPR008271	GO:0004672\|GO:0006468
	Pumo3g00723	549	ProSiteProfiles	Protein kinase domain profile.	144	512	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo3g00723	549	ProSiteProfiles	Gnk2-homologous domain profile.	25	129	IPR002902	-
	Pumo3g00723	549	Gene3D	Transferase(Phosphotransferase) domain 1	319	515	-	-
	Pumo3g00723	549	ProSitePatterns	Protein kinases ATP-binding region signature.	291	313	IPR017441	GO:0005524
	Pumo3g00723	549	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	324	544	-	-
	Pumo3g00723	549	Pfam	Protein kinase domain	326	504	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo3g00723	549	Pfam	Salt stress response/antifungal	31	126	IPR002902	-
	Pumo3g00723	549	Pfam	Salt stress response/antifungal	162	242	IPR002902	-
	Pumo3g00723	549	SUPERFAMILY	Protein kinase-like (PK-like)	269	534	IPR011009	-
	Pumo3g00723	549	SMART	serkin_6	285	506	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo3g00723	549	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 10	24	129	-	-
	Pumo3g00723	549	ProSiteProfiles	Gnk2-homologous domain profile.	142	247	IPR002902	-
	Pumo3g00723	549	FunFam	cysteine-rich receptor-like protein kinase 10	310	513	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g00723	Pumo-Chr3	11502869	11555691	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g00723	21	538	Receptor kinase-like Gene Family	AT4G23150	35.816	4.19e-120	367

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pumo3g00723		Pkinase	3.6e-28	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo3g00723	-		-	gmx:100792162	843.573