Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00716 ATGCTTGCCTCCAAATTTTCCACAACCCCGTTAGCTCTTTTATGTCTGTTTTGTATGCTCTTCCATGCAAGTGAATCAGCACCCGTTTACAGTGACCACTTCTGCACCAACCGAACCCTTTACCAACCCAACACCACATTTGAATCCAACTTGAATACCCTCCTCTCTTCTCTTATTTCAAACTCCTCCCTTCACTCCAACAATGGTTTCTACCGAACCTCCGTGGCTCGAGACACCCCCGACGACATCGACGGCCTTTTCCTCTGCCGTGGCGACGTCAACGCCACCGTCTGCCACGACTGCGTCTCCGCCGCAGCCACGAACATAACGCGCCTCTGTCCCAACGACACAGAGCCCTACATCTGGTACGACGTGTGTATGCTAAGTTACTCCAACAGCACCTTCGACAATGACAACATAGTTCCCGGGCTTCAGTTACGAAATGAAAGAAGCATCGCTAACTCGAGCCGTGACCAGTTCAATGAATTATTGGCGAGCTTGTTAAATAGTTTGGCGGCGAGTTCCATGTCAGAGAAGAAGTTTGCCCCAGGTGAAGTGAGCATCTCGAGCACGCAGACGCTGTACGGAATGGCACAGTGCGTGCCTGACTTAACAAGCACTAGTTGTTCCGCGTGCTTTGGAAGCGCTATTGCAACTCTTCCCACGTGCTGTAACGGAAGTGAAGGAGCAAGGGTTCTGCTTCCGGCATGTAATATCAGATACGAACTGTATCCGTTTTTGTACAATTCCACTTCGATGACGCCACTCCCTTCTTCAGGTAGCAAAAGTACATTGATGGTTGTAGCAATTGTTATCCCAATTGCTATTTTGGTGGCGCTTTTGGTTATAGGATGCTGTTGGTGGCGAAGAAGGCGAAACAAAAACCGTGAGGCTGTCCTGGAAGTGACTGATAGCATTAGGAAATATTTGACAAGTGAGGAAGAATCTTTGCATTTTGACTTGGCTACGATTGAAGCTGCCACAAATAGTTTCTCAAATGAGATGAAGATAGGAGAAGGTGGATTTGGTGTGGTTTATAAGGGTACCTTTCCAAATGGACAAGAGATAGCTGTGAAGAGGCTATCAAGAACCTCCCTCCAAGGTGACAGAGAATTCAGGAACGAGGCTTCACTTGTTGCACAGCTTCAACACAGAAATTTAGTTAGACTGTTAGGATTTTGCTCAGAGGGAACGGAGAGGATACTTGTTTATGAATTTATCCCAAATTCCAGCCTTGATCACTTTCTATTTGGTCATGAAGACCAAGGAGAGCTAGACTGGGCAAGACGTTACAAAATTATAGTTGGGATTGCCCGAGGAATTCAATATCTCCATGAAGATTCTAGGCTAAGAGTAATACACCGTGATCTCAAAGCTAGTAATGTTCTATTAGATGCTGATATGAATCCAAAGATTTCAGATTTTGGGATGGCAAAGATTTTCCATGGAGATCAAAGTCAAGAAAATACAAGAACAGGAAGGGTAGTTGGAACTTTCGGTTACATGTCTCCTGAATATGCAATGCATGGGAAATTCTCAGTGAAATCCGATGTGTTCAGCTTTGGAGTCTTGGTTTTGGAAATCCTTAGTGGCAAGAAGAACACAAGTCATTATCAATCACATCAAGACAATAATGACCTTTTGAGTTTTGCTTGGAAGAATTGGACAAATCAAACACCTTTCCTGATATTGGATCCAAAACTGAGTGGTTCTTATTCTAGAAACGAAGTTCGGAGATGCATCCATATTGCTTTATTATGTGTTCAAGAAAATCCAGTTGATAGACCTTCAATGGCGACTATAATGCTTGCGTTGAACAGTTACTCAGTAACTTTAGCGTTACCTCGACAGCCAGCATCTCTTCTGCGAGGAAGAGCAACACCAGACAGATTAAAACACCAGCTTGATTCTGATCGGTCTACCAGCTCTACAATTCCCTTATCTACAAATGATTCTTTTATAACTGAAGTATATCCCCGGTAA 1983 0.4413 MLASKFSTTPLALLCLFCMLFHASESAPVYSDHFCTNRTLYQPNTTFESNLNTLLSSLISNSSLHSNNGFYRTSVARDTPDDIDGLFLCRGDVNATVCHDCVSAAATNITRLCPNDTEPYIWYDVCMLSYSNSTFDNDNIVPGLQLRNERSIANSSRDQFNELLASLLNSLAASSMSEKKFAPGEVSISSTQTLYGMAQCVPDLTSTSCSACFGSAIATLPTCCNGSEGARVLLPACNIRYELYPFLYNSTSMTPLPSSGSKSTLMVVAIVIPIAILVALLVIGCCWWRRRRNKNREAVLEVTDSIRKYLTSEEESLHFDLATIEAATNSFSNEMKIGEGGFGVVYKGTFPNGQEIAVKRLSRTSLQGDREFRNEASLVAQLQHRNLVRLLGFCSEGTERILVYEFIPNSSLDHFLFGHEDQGELDWARRYKIIVGIARGIQYLHEDSRLRVIHRDLKASNVLLDADMNPKISDFGMAKIFHGDQSQENTRTGRVVGTFGYMSPEYAMHGKFSVKSDVFSFGVLVLEILSGKKNTSHYQSHQDNNDLLSFAWKNWTNQTPFLILDPKLSGSYSRNEVRRCIHIALLCVQENPVDRPSMATIMLALNSYSVTLALPRQPASLLRGRATPDRLKHQLDSDRSTSSTIPLSTNDSFITEVYPR 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00716 660 FunFam Cysteine-rich receptor-like protein kinase 10 289 406 - -
Pumo3g00716 660 CDD STKc_IRAK 337 601 - -
Pumo3g00716 660 ProSiteProfiles Gnk2-homologous domain profile. 140 246 IPR002902 -
Pumo3g00716 660 FunFam Cysteine-rich receptor-like protein kinase 10 143 246 - -
Pumo3g00716 660 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 36 656 - -
Pumo3g00716 660 Gene3D Transferase(Phosphotransferase) domain 1 407 613 - -
Pumo3g00716 660 MobiDBLite consensus disorder prediction 623 647 - -
Pumo3g00716 660 SMART serkin_6 331 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00716 660 ProSiteProfiles Gnk2-homologous domain profile. 29 135 IPR002902 -
Pumo3g00716 660 FunFam cysteine-rich receptor-like protein kinase 10 407 612 - -
Pumo3g00716 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Pumo3g00716 660 SUPERFAMILY Protein kinase-like (PK-like) 315 627 IPR011009 -
Pumo3g00716 660 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 28 135 - -
Pumo3g00716 660 ProSiteProfiles Protein kinase domain profile. 331 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00716 660 Gene3D Phosphorylase Kinase; domain 1 292 406 - -
Pumo3g00716 660 Pfam Protein tyrosine and serine/threonine kinase 334 603 IPR001245 GO:0004672|GO:0006468
Pumo3g00716 660 Pfam Salt stress response/antifungal 35 132 IPR002902 -
Pumo3g00716 660 Pfam Salt stress response/antifungal 154 244 IPR002902 -
Pumo3g00716 660 Gene3D - 29 135 IPR038408 -
Pumo3g00716 660 Gene3D - 145 246 IPR038408 -
Pumo3g00716 660 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00716 Pumo-Chr3 11362211 11365494 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00716 2 660 Receptor kinase-like Gene Family AT4G05200 47.661 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo3g00716 PK_Tyr_Ser-Thr 4.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00716 - - ccaj:109806163 1035.79