Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00689 ATGCCTTCCTCAACCAACGCCGCAATGCCTCTCTCCGCCGCTGACTTCCTCTGCGGCGAAGACGCCAGCGAAGTGACCTCCGACCACCACCCCCCGCCCTCCCCCTTCCCGGATTCTGATGAGGCCGCCATCGCCGGACTCCTCGACGCCGAGTCCCACCACATGCCGGAAAAAGACTACCTCCGCCGCTGCCGCGACCGCTCCCTCGACCTCACCGCGCGCTTGGACGCCGTCAACTGGATCTTAAAGGTCCAGGCATTCTACCACTTCTCCCCGGTAACGGCGTTTCTCTCCGTCAACTATCTCGACCGTTTCCTCTCTCGCTGCTCTCTTCCGCAACAAAGTGGGTGGCCGTTTCAGCTGCTATCAGTGGCATGTTTGTCTCTTGCAGCGAAAATGGAGGAGTCCCATGTGCCTTTCTTACTGGACCTCCAATTGTTCGAGCCCCAGTTCATCTTCGAGCCCAAAATGATTCAGAGAATGGAGCTTTGGGTCATGTCCAATCTCAAATGGAGACTCCGCTCCGTCACCCCCTTCGATTATCTTCATTATTTCATCTCCAAGCTTCCTTCTTCATCTTCTTCTTCCGAATCCATGAATCAGTTTTTCCCCACAGCCTCCAACCTCATTCTCAGCACCACTCGTGTGATTAACTTCTTGGGATTTTCGCCGTCCACTGTGGCAGCCGCCGCCGTGCTTTGCTCCGCCAACGGCCAATTGCCGCTGAGTTTTCATGACAGAGTAAACAATGAAATGGTGAGATGCTGTCACCAACTAATGGAGGAGTACGTGGTGGACACGTGTCCCGCATCCACTTCCTCCATTAAAGCCACAATAGCCGAGCCGGCGCCGCCCCCCAGCCCCGTCGGCGTGCTCGACGCCGCCACCTGTGGGAGCTGCGACACACCTTCCGAGAGGAATTTCGCCGGCTCCACCGAGGAACAAGCCGAGCCACCAAATAAACGGCTTCGATCCTCTGCTCTAGATGCACCCGACCGGTAG 1002 0.5699 MPSSTNAAMPLSAADFLCGEDASEVTSDHHPPPSPFPDSDEAAIAGLLDAESHHMPEKDYLRRCRDRSLDLTARLDAVNWILKVQAFYHFSPVTAFLSVNYLDRFLSRCSLPQQSGWPFQLLSVACLSLAAKMEESHVPFLLDLQLFEPQFIFEPKMIQRMELWVMSNLKWRLRSVTPFDYLHYFISKLPSSSSSSESMNQFFPTASNLILSTTRVINFLGFSPSTVAAAAVLCSANGQLPLSFHDRVNNEMVRCCHQLMEEYVVDTCPASTSSIKATIAEPAPPPSPVGVLDAATCGSCDTPSERNFAGSTEEQAEPPNKRLRSSALDAPDR 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00689 333 Pfam Cyclin, C-terminal domain 176 275 IPR004367 -
Pumo3g00689 333 Gene3D - 47 243 - -
Pumo3g00689 333 PANTHER CYCLINS 47 265 IPR039361 -
Pumo3g00689 333 CDD CYCLIN_AtCycD-like_rpt1 73 171 - -
Pumo3g00689 333 FunFam D2/4-type cyclin 57 170 - -
Pumo3g00689 333 SMART Cyclin_C_2 176 288 IPR004367 -
Pumo3g00689 333 MobiDBLite consensus disorder prediction 22 41 - -
Pumo3g00689 333 FunFam D6-type cyclin 171 258 - -
Pumo3g00689 333 Pfam Cyclin, N-terminal domain 48 173 IPR006671 -
Pumo3g00689 333 MobiDBLite consensus disorder prediction 303 333 - -
Pumo3g00689 333 ProSitePatterns Cyclins signature. 74 105 IPR006671 -
Pumo3g00689 333 SUPERFAMILY Cyclin-like 35 173 IPR036915 -
Pumo3g00689 333 SMART cyclin_7 79 167 IPR013763 -
Pumo3g00689 333 Gene3D - 57 174 - -
Pumo3g00689 333 CDD CYCLIN_AtCycD-like_rpt2 176 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00689 Pumo-Chr3 10270489 10272469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00689 15 279 Core Cell Cycle Gene Families AT1G70210 43.214 1.01e-68 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00689 K18810 - gmx:100776178 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00689 3 10270489 10272469 Pumo3g00689 3 10270489 10272469 ECH