Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00685 ATGGCCAGTTTTGCAGGAACCACACAGAAGTGCATGGCTTGTGACAAAACTGTGTACCTTGTTGATAAGTTAACTGCAGATGGCCGTATTTTTCACAAGGCCTGCTTCCGATGCCACCATTGCCGTAGTACCCTTAAGCTTAGCAACTACTGTTCTTTTGAGGGGGTGCTCTACTGCAGACCTCACTATGATCAACTCTACAAGCGAACCGGCAGCCTGGACAAAAGCTTTGAAGGAACACCCAAAATTCAGAAACCAGAGAGACCGGCCACTGATAATGAGAATACTAAGGTCATCGCAAACGTGTTCTTGGGCACCAGAGACAAATGTGTGTGTTGCAAAAAGACAGTGTATCCCACTGAGAGGGTTACGGTTAATGGGACTCCCTACCACAAGGGCTGCTTCAAATGTACCTATGGAGGTTGTACTATAAGCTCATCAAACTTTATCACACACGAGGGAAAGCTCTACTGCAAACACCATCACATTCAACTTTTCAAGGAGAAAGGCAATTACAGTCAGCTCGAGAATGACCAAGTTGTTGCTACCACAGAAATCACTGCTTGA 567 0.4568 MASFAGTTQKCMACDKTVYLVDKLTADGRIFHKACFRCHHCRSTLKLSNYCSFEGVLYCRPHYDQLYKRTGSLDKSFEGTPKIQKPERPATDNENTKVIANVFLGTRDKCVCCKKTVYPTERVTVNGTPYHKGCFKCTYGGCTISSSNFITHEGKLYCKHHHIQLFKEKGNYSQLENDQVVATTEITA 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00685 188 CDD LIM1_SF3 7 69 - -
Pumo3g00685 188 FunFam LIM domain and actin-binding 1 5 75 - -
Pumo3g00685 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Pumo3g00685 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Pumo3g00685 188 Gene3D Cysteine Rich Protein 105 174 - -
Pumo3g00685 188 Gene3D Cysteine Rich Protein 5 75 - -
Pumo3g00685 188 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Pumo3g00685 188 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Pumo3g00685 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Pumo3g00685 188 FunFam LIM domain and actin-binding 1 104 174 - -
Pumo3g00685 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Pumo3g00685 188 PANTHER OS06G0237300 PROTEIN 2 94 - -
Pumo3g00685 188 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Pumo3g00685 188 SMART lim_4 109 161 IPR001781 -
Pumo3g00685 188 SMART lim_4 10 62 IPR001781 -
Pumo3g00685 188 Pfam LIM domain 11 65 IPR001781 -
Pumo3g00685 188 Pfam LIM domain 110 165 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00685 Pumo-Chr3 10180158 10181833 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Pumo3g00685 LIM 1e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00685 K09377 - gmx:100306027 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00685 3 10180158 10181833 Pumo3g00685 3 10180158 10181833 ECH