Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00675 ATGGAACCTGTTCAATTGATTTCTGAAGAATGGGGTTCTCTTTGTGGATTGCAGACAACTGAAGAAGCTGACTTTATAGCTCAGTTGTTTGGGGGTAACAATTCTGTCACAGAAAAGCACTGTGGAAATTCCACTTTTGGCTTTTGGCCTGGCCATGAATCCACAATAGTGGCCATGACAGACACTAATAGCAACTCATACTTTCCTTCAAATGTTACAGATACTAATACTAATTTTTTGTGTTTCTCACAAGGGAGTAGCTCCAGCACTGATAGTGGTAATTACAACTTTTCCACTACAAGTAGTGGAACCTACTCCTGTGATCCAGAAACAAACTTTGACTCTGTGTCCATGGTTTTGTGCATTGGAGATGCCAAATTTATTCCCCATAATTTTCAATGGAATGACAACTCAAGCCAACAGATAAATGAAAACAGTCACACTGATGAAGAGTCAAGTCTAGACCCAGGGAAACTGGCTCTTGCTGACAAAAATTTGCAGGCTAAGAGGGAGTATGAAATGATGGTTTCTGAACCTGCAGAAGAGGATAGAAGCAGAAACCTGGAGAACCTACCAAAAAGAATAAAGAGCTCAGTAGAGGTCTCAAAAACATTGAGGAATGCTAAATCAAGGAAAAATCCAAAATCTGCTTCAATGAGCAGCGATGAAGATGACAGAAGCTTGAGCCTCCAAAGGCATAGCTGTTTTTCACAGGGTGACTCTAATGCTTCTCTGGAGCCAAATGGAGGGGCATCAAAAGATCCTGCACCTCCCAATTTGCATAGAAAATCAAGAGCAACTACCCGTCCTGCCACTGATCCACAGAGCCTTTATGCAAGAAAGAGAAGAGAAAGAATAAATGAAAGGTTGAGAATACTGCAAAATCTTGTCCCCAACGGAACTAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTTCAGTACGTGAAGTTTTTACAGCTCCAAATTAAGCTTCTGAGCTCTGACGATTTGTGGATGTATGCTCCAATTGCTTACAATGGAATAAACATTGGACTAGACCTCAGTATTTCTCCAACCAAAGGAAGATCAATGTGA 1077 0.4123 MEPVQLISEEWGSLCGLQTTEEADFIAQLFGGNNSVTEKHCGNSTFGFWPGHESTIVAMTDTNSNSYFPSNVTDTNTNFLCFSQGSSSSTDSGNYNFSTTSSGTYSCDPETNFDSVSMVLCIGDAKFIPHNFQWNDNSSQQINENSHTDEESSLDPGKLALADKNLQAKREYEMMVSEPAEEDRSRNLENLPKRIKSSVEVSKTLRNAKSRKNPKSASMSSDEDDRSLSLQRHSCFSQGDSNASLEPNGGASKDPAPPNLHRKSRATTRPATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGINIGLDLSISPTKGRSM 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00675 358 MobiDBLite consensus disorder prediction 138 157 - -
Pumo3g00675 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 274 335 IPR036638 GO:0046983
Pumo3g00675 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 270 319 IPR011598 GO:0046983
Pumo3g00675 358 MobiDBLite consensus disorder prediction 176 282 - -
Pumo3g00675 358 MobiDBLite consensus disorder prediction 231 248 - -
Pumo3g00675 358 CDD bHLH_AtIND_like 271 333 - -
Pumo3g00675 358 MobiDBLite consensus disorder prediction 216 230 - -
Pumo3g00675 358 MobiDBLite consensus disorder prediction 176 193 - -
Pumo3g00675 358 Pfam Helix-loop-helix DNA-binding domain 280 320 IPR011598 GO:0046983
Pumo3g00675 358 SMART finulus 276 325 IPR011598 GO:0046983
Pumo3g00675 358 FunFam Basic helix-loop-helix transcription factor 271 328 - -
Pumo3g00675 358 Gene3D - 272 328 IPR036638 GO:0046983
Pumo3g00675 358 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 82 328 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00675 Pumo-Chr3 10052723 10054521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00675 10 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 38.147 3.99e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo3g00675 HLH 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00675 - - gmx:100816788 583.563