Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00671 ATGGCTTTGGAGGCTTTGAATTCTCCTACAGCAGCGACCACTCCCTTCCGTCGCTACCAAGAAGAAGAGGAGGAGGTTGAGGTTGACCTTCAGTTCCGCGAGCCTTGGGCTAAAAGGAAACGCTCGAAACGACCACGTTTTGAGACAGAGGAAGAGTACCTCGCTCTTTGCCTCATCATGCTCGCACAAAGCGGTAACAACAGAAACATCAACAACAACAACGATGAATTGCCGTCATCGTCACAGTCACACAAAGAAGCGTCACCGCCGGTGAAACTAACACACAGGTGCACCGTTTGCAACAAGGCCTTTTCTTCTTACCAAGCACTCGGTGGACACAAGGCCAGCCACCGCAAAGCATCGTCGGAATTCACCACCGCCGCCGTCTCCGCCGTGGCCAACGACAGCGTTTCCGCTTCCACCGTCGGCGGCGGAAGGATGCACGAGTGCTCCATCTGTCACAAGAGTTTCCCCACCGGTCAGGCCCTGGGTGGCCACAAGCGCTGCCACTACGACGGCGGAAACAACCACAGCAACAGCAACGCCAACGGCAACAACAGCAGCGGCGTCACTTCCTCCGACGGCGGTGCGGCCTCCTCCTCCCACACGCTCCGTGGGTTTGACCTGAACCTGCCGGCGCCGCTGACGGAGTTCTGGTCGCCGGCGGGGTTTGATTTCGGGAAGAAGAAGGTTGACGGTGAACAAGAGGTGGAAAGCCCGTTGCCAGTAACCGCCAAGAGGCCGCGTTTGTTTTCAGGGAATCATGATGATGATGAAACGGCGTAG 786 0.5712 MALEALNSPTAATTPFRRYQEEEEEVEVDLQFREPWAKRKRSKRPRFETEEEYLALCLIMLAQSGNNRNINNNNDELPSSSQSHKEASPPVKLTHRCTVCNKAFSSYQALGGHKASHRKASSEFTTAAVSAVANDSVSASTVGGGRMHECSICHKSFPTGQALGGHKRCHYDGGNNHSNSNANGNNSSGVTSSDGGAASSSHTLRGFDLNLPAPLTEFWSPAGFDFGKKKVDGEQEVESPLPVTAKRPRLFSGNHDDDETA 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00671 261 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Pumo3g00671 261 MobiDBLite consensus disorder prediction 230 261 - -
Pumo3g00671 261 SMART c2h2final6 148 170 IPR013087 -
Pumo3g00671 261 SMART c2h2final6 95 117 IPR013087 -
Pumo3g00671 261 MobiDBLite consensus disorder prediction 69 88 - -
Pumo3g00671 261 SUPERFAMILY beta-beta-alpha zinc fingers 95 170 IPR036236 -
Pumo3g00671 261 Pfam C2H2-type zinc finger 95 119 - -
Pumo3g00671 261 Pfam C2H2-type zinc finger 148 172 - -
Pumo3g00671 261 MobiDBLite consensus disorder prediction 1 24 - -
Pumo3g00671 261 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 39 213 IPR044653 GO:0003700
Pumo3g00671 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 170 IPR013087 -
Pumo3g00671 261 Gene3D Classic Zinc Finger 92 170 - -
Pumo3g00671 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Pumo3g00671 261 MobiDBLite consensus disorder prediction 180 201 - -
Pumo3g00671 261 MobiDBLite consensus disorder prediction 69 89 - -
Pumo3g00671 261 ProSitePatterns Zinc finger C2H2 type domain signature. 150 170 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00671 Pumo-Chr3 10021766 10022551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00671 1 250 C2H2 Transcription Factor Family AT1G27730 44.061 2.93e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g00671 zf-C2H2_6 1.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00671 - - gmx:100819484 426.017