Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00669 ATGAGCTGCAATGGTTGTCGTGTCCTCCGAAAGGGTTGCAGTGAGGACTGCATGCTACGGCATTGCCTACTGTGGATAGAGAACCCACAAGCCCAAGCTCACGCCACCCTCTTCGTCGCCAAGTTCTTCGGCCGTGCCGCTCTCATGTCTTTCCTTTCCTCCGTACCCGCCAACCAAAGATCCGCTTTGTTTCAGTCACTGCTTTATGAAGCAGTGGGGCGTACTATAAATCCAGTGAATGGAGCAGTGGGGCTGTTGTGGACAGGGAACTGGCACCTCTGCCAAATGGGTGTGGAGAAAGTGCTACGAGGTGGTGCTGCGTTGACCCCACTCCCTCAATTCTTGGGTGTAGATCAACAACAGGGTGTGGAGAGAGTGATGGTTGGAGGTGGAATAATGTGTGACCAGCCAAAGAAGCAACGTGTGGGGACACCCTCTGAGGAATCCCAGACCTCCACGTTCGGAAGTAGACCACAGGATTCTGCTCCTCAAAGTCAAACCAACCTACTCACACTATTCTTCTGA 525 0.5295 MSCNGCRVLRKGCSEDCMLRHCLLWIENPQAQAHATLFVAKFFGRAALMSFLSSVPANQRSALFQSLLYEAVGRTINPVNGAVGLLWTGNWHLCQMGVEKVLRGGAALTPLPQFLGVDQQQGVERVMVGGGIMCDQPKKQRVGTPSEESQTSTFGSRPQDSAPQSQTNLLTLFF 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00669 174 MobiDBLite consensus disorder prediction 134 167 - -
Pumo3g00669 174 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Pumo3g00669 174 Pfam Lateral organ boundaries (LOB) domain 2 99 IPR004883 -
Pumo3g00669 174 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 122 - -
Pumo3g00669 174 MobiDBLite consensus disorder prediction 143 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00669 Pumo-Chr3 9995510 9996602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00669 1 115 AS2 family AT3G49940 74.783 7.51e-61 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo3g00669 LOB 6.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00669 - - gmx:100816269 305.064