Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00650 ATGGCTAGTCCAACTGGAGAATTGACAAGCCATAACGATGATGCCACTGAGCGGATGGAAACTGAACAATGTGAATTGTCTGAAAAAACGCCTCAGATAGGCTCTGAAGGTTTAGAGAGGGAACAAAAGGAGGTTGGTACCGAGTTAACCAGTTTGGTTGTAGACAAAAAATCAAATCAAGTTCCTGCCAATGTGACAGAGAATTCTGTTATTCAACCACCTGCACTGCCTCAACATGACTTAGAAAAGAATTGCCAGGTTGTAGAAGGTTCATGCCTTCAACAAAGTACCGTTGAACAAGTCTCTGTTCATTTATCTAATGATCAACCTGAAAACCAATGCCAACCATTGTCTGAAAATGTTCAAAGTGAACCTGTAGAATCCATTCCTGCCTTTGTTGTTGAGGGTCAAATGCAATCCAGTCCAGTTCAAGCGAATATGAGTTCTGTGAATGAATTGTTGGATCCACCTTCTGAAGATGTTGTGAACAATATTAGTTCAGAAAAAATGGCTAATAGCCCAACTCATTCGCAATCGAGGCGCAAGGGTAAAAGAAACTCTAAATTATTGAAGAAGAAGTATATGCTAAGGTCATTAGGAAGCAGTGACAGAGCTTTGCGGTCAAGAACAAAAGAAAAACCCAAGGAACCTGAACCAACTAGTAATTTGGTTGACAGTAATAGCAATGATGGAGTGAAAAGGAAAAGTGGGAGGAAGAAGAAAAACAGAAGAAGACAGGAGGGAATTACTGATCAGTTTTCTAGAATCAGATCTCACTTAAGATATTTATTAAACCGAATAAGCTATGAGAAAAGCTTGATTGATGCTTATTCTGGCGAGGGGTGGAAAGGATACAGTATGGAAAAATTAAAGCCTGAGAAGGAGCTTCAGAGGGCTAAGTCTGAAATTCTTCGACGCAAATTGAAAATTAGGGATCTATTTCGAAATTTGGATTCATTGTGTGCTGAAGGAAAGCTTCCAGAATCTTTGTTTGATTCCGCAGGAGAGATTGACAGTGAGGATATATTTTGTGCAAAATGCCATTCCAAAGAGTTGAGCACTAATAATGATATAATTCTCTGTGATGGTGTTTGTGACCGTGGATTTCACCAGCTCTGTTTGGATCCTCCGTTGTTAACTGAAGACATTCCACCTGGCGATGAGGGTTGGTTATGCCCAGGATGCGATTGCAAAGATGACTGCATGGACCTTGTTAACGACTCCTTTGGAACAAGTCTCTCTATTAGTGACACCTGGGAGAGAGTCTTTCCTGAAGCAGCATCATTTGCTGGAAATAATATGGATAACAACTTGGGACTTCCTTCTGATGATTCTGATGATGATGATTATAATCCTAATGGTCCAGAGGATGTGAAAGTTGAAGGGGATGAGTCAAGTTCTGACGAATCCGAGTATGCTTCTGCTTCTGAGAAATTGGAGGGTGGTTCACATGAGGATCAATACTTGGGCCTTCCATCTGAAGATTCTGATGATGGTGATTATGATCCTAATGCTCCAGATGTTGACTGTAAAGCCAATGAAGAAAGTTCAAGCTCTGATTTCACATCTGACTCTGAGGATCTTGCTGCTGCAATTGAGGATAACACATCCCCTGGACAGGATGGAAGCATAAGTTCTAGCAAAAAAAAGGGTAAAGTTGGTAAGAAGCTATCTATGGCTGATGAACTGTCATCTTTACTAGAGCCAGATTCTGACCAAGAGGGTCCCACTCCTGTTTCTGGGAAAAGACATGTGGAAAGGTTGGACTACAAAAAGCTGTATGAGGAGACGTACCACAGTGATACTAGTGATGATGAAGATTGGACTGAGACTGCTGCTCCAAGTAGAAAAAAGAACACTGGCAATGTGACTCCAGTGTCACCAAATGGAAATGCTTCAAATAATTCTATACATACTCCTAAGAGGAATGCTCATCAGAATAAAGTTGAAAATACAAATAACTCACCCAGTAAATCACCTGATGGCTGTGCGAAATCTGGTTCCAGGGATAAAAAGTCTGGATCTTCAGCACACAAAAGACTAGGAGAAGCCGTAGTTCAGAGACTTCACAAATCTTTTAAAGAAAATCAGTATCCAGATAGAACCACAAAAGAAAGCTTGGCACAAGAACTTGGACTTACTTATCAGCAGGTTGCCAAATGGTTCGACAATACACGTTGGAGCTTCCGGCATTCCTCACAAATGGAATCCAATTCAGGTAGAAATGCTTCACAACAAGCTACTGATGGCAGAGCTGAAAATGAGGGGGAGAAGGAATGTGAATTAATGTCCCCGGCGGTCAGTGGAGAGAAATCAGAAACCCCAAGCTCTAGAAAAAGGAAGCATTTGTCAGAACCCCAAGCATCTGAAGCACAGCTGGATATCAATGGCTCAGCAACAAGTTCACCAAATGTTCATCAAATGCAAATAGGCAATAAAATGAAGACAAGGAAAAGGAAATGA 2463 0.4109 MASPTGELTSHNDDATERMETEQCELSEKTPQIGSEGLEREQKEVGTELTSLVVDKKSNQVPANVTENSVIQPPALPQHDLEKNCQVVEGSCLQQSTVEQVSVHLSNDQPENQCQPLSENVQSEPVESIPAFVVEGQMQSSPVQANMSSVNELLDPPSEDVVNNISSEKMANSPTHSQSRRKGKRNSKLLKKKYMLRSLGSSDRALRSRTKEKPKEPEPTSNLVDSNSNDGVKRKSGRKKKNRRRQEGITDQFSRIRSHLRYLLNRISYEKSLIDAYSGEGWKGYSMEKLKPEKELQRAKSEILRRKLKIRDLFRNLDSLCAEGKLPESLFDSAGEIDSEDIFCAKCHSKELSTNNDIILCDGVCDRGFHQLCLDPPLLTEDIPPGDEGWLCPGCDCKDDCMDLVNDSFGTSLSISDTWERVFPEAASFAGNNMDNNLGLPSDDSDDDDYNPNGPEDVKVEGDESSSDESEYASASEKLEGGSHEDQYLGLPSEDSDDGDYDPNAPDVDCKANEESSSSDFTSDSEDLAAAIEDNTSPGQDGSISSSKKKGKVGKKLSMADELSSLLEPDSDQEGPTPVSGKRHVERLDYKKLYEETYHSDTSDDEDWTETAAPSRKKNTGNVTPVSPNGNASNNSIHTPKRNAHQNKVENTNNSPSKSPDGCAKSGSRDKKSGSSAHKRLGEAVVQRLHKSFKENQYPDRTTKESLAQELGLTYQQVAKWFDNTRWSFRHSSQMESNSGRNASQQATDGRAENEGEKECELMSPAVSGEKSETPSSRKRKHLSEPQASEAQLDINGSATSSPNVHQMQIGNKMKTRKRK 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00650 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 400 IPR013083 -
Pumo3g00650 820 MobiDBLite consensus disorder prediction 773 787 - -
Pumo3g00650 820 CDD homeodomain 686 733 IPR001356 GO:0003677
Pumo3g00650 820 SMART HOX_1 674 736 IPR001356 GO:0003677
Pumo3g00650 820 MobiDBLite consensus disorder prediction 664 701 - -
Pumo3g00650 820 SMART PHD_3 343 396 IPR001965 -
Pumo3g00650 820 MobiDBLite consensus disorder prediction 614 662 - -
Pumo3g00650 820 MobiDBLite consensus disorder prediction 11 25 - -
Pumo3g00650 820 SUPERFAMILY FYVE/PHD zinc finger 333 401 IPR011011 -
Pumo3g00650 820 Pfam Homeodomain 684 728 IPR001356 GO:0003677
Pumo3g00650 820 MobiDBLite consensus disorder prediction 138 153 - -
Pumo3g00650 820 SUPERFAMILY Homeodomain-like 675 736 IPR009057 -
Pumo3g00650 820 CDD PHD_PRHA_like 343 395 IPR045876 -
Pumo3g00650 820 MobiDBLite consensus disorder prediction 789 811 - -
Pumo3g00650 820 ProSiteProfiles Zinc finger PHD-type profile. 341 398 IPR019787 -
Pumo3g00650 820 MobiDBLite consensus disorder prediction 731 820 - -
Pumo3g00650 820 FunFam pathogenesis-related homeodomain protein-like 335 395 - -
Pumo3g00650 820 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 131 791 - -
Pumo3g00650 820 MobiDBLite consensus disorder prediction 178 192 - -
Pumo3g00650 820 MobiDBLite consensus disorder prediction 138 250 - -
Pumo3g00650 820 MobiDBLite consensus disorder prediction 204 219 - -
Pumo3g00650 820 MobiDBLite consensus disorder prediction 511 525 - -
Pumo3g00650 820 FunFam Homeobox protein HAT3.1 674 743 - -
Pumo3g00650 820 MobiDBLite consensus disorder prediction 1 46 - -
Pumo3g00650 820 Pfam PHD-finger 343 398 IPR019787 -
Pumo3g00650 820 ProSitePatterns Zinc finger PHD-type signature. 344 395 IPR019786 -
Pumo3g00650 820 ProSiteProfiles 'Homeobox' domain profile. 672 732 IPR001356 GO:0003677
Pumo3g00650 820 MobiDBLite consensus disorder prediction 731 750 - -
Pumo3g00650 820 MobiDBLite consensus disorder prediction 430 703 - -
Pumo3g00650 820 MobiDBLite consensus disorder prediction 160 177 - -
Pumo3g00650 820 Gene3D - 674 745 - -
Pumo3g00650 820 MobiDBLite consensus disorder prediction 577 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00650 Pumo-Chr3 9756577 9764099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00650 239 729 Homeobox Transcription Factor Family AT3G19510 47.070 8.34e-135 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Pumo3g00650 PHD 2.3e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00650 - - gmx:100811458 1409.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00650 3 9756577 9764099 Pumo3g00650 3 9756577 9764099 ECH