Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00648 ATGATCAAAGAAGATGAAACAACTCTTGCAACAGCCAAAGAACAACCAAGTGAAGTGATGAACGGAGACAAGGACAATTATGGAAGCGAAGATGACAATCCCAAAGAGTGGTTGAACCTGAGCATAGGTGGTGCTTCACTCTCAACTGCTGGAGACCCTGATTCACAATCAAGACCAGCCACTGCCAAAGTTTTTTCATGCAACTTCTGCATGAGGAAGTTCTTCAGCTCACAAGCATTAGGAGGTCATCAGAACGCCCACAAGAGGGAAAGGGGAGCTGCAAGAAGATACCAATCTCAGAGGTCGATGGCAATAATGGGCTTCTCCATGAACACACCTACTATGCTTCGATCACTTGGTGTCCAGCCCCATTCACTTGTGCACAAGCCATGCAGAGGTGGTACCATGGTGGCACCAAGCTTTCATGATGCACATGCAAGGCTTGGGATGGCATGGACACCTTTCTCATCTGAGGATCAAGCAGATCTGGTGTGGCCAGGCAGCTTTCGCTTGGTTCCACAACATCCACAGCCACCACAGGAGCCACTCAAGCTTGATTTAGACCTCAGACTCTGA 576 0.4861 MIKEDETTLATAKEQPSEVMNGDKDNYGSEDDNPKEWLNLSIGGASLSTAGDPDSQSRPATAKVFSCNFCMRKFFSSQALGGHQNAHKRERGAARRYQSQRSMAIMGFSMNTPTMLRSLGVQPHSLVHKPCRGGTMVAPSFHDAHARLGMAWTPFSSEDQADLVWPGSFRLVPQHPQPPQEPLKLDLDLRL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00648 191 Gene3D Classic Zinc Finger 53 111 - -
Pumo3g00648 191 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
Pumo3g00648 191 PANTHER ZINC FINGER PROTEIN 4-LIKE 3 191 - -
Pumo3g00648 191 MobiDBLite consensus disorder prediction 1 39 - -
Pumo3g00648 191 MobiDBLite consensus disorder prediction 18 32 - -
Pumo3g00648 191 SUPERFAMILY beta-beta-alpha zinc fingers 62 91 IPR036236 -
Pumo3g00648 191 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00648 Pumo-Chr3 9747114 9748713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00648 52 179 C2H2 Transcription Factor Family AT1G24625 41.985 8.33e-20 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00648 - - gmx:100306296 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00648 3 9747114 9748713 Pumo3g00648 3 9747114 9748713 ECH