Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00581 ATGTCCTCTGCAAAAAGAGCAAGGTCTGCTTCTGCTTCTGCTTCGCCGGTTAGAGGCCGTCGATCAAGGTCATTATCAAGGTCCAGGAGAAGTCGTTCCAGGAGTCAAGATTCTGCTGATGCGGAGAATCCTGGAAATAATTTGTATGTTACAGGCTTGTCCACAAGGATATCTGACAGTGATCTTCAGAAGTATTTCAGTAAAGAGGGAAAGGTTGTCGACTGCCACTTGGTAAAAGATCCTCGTACCAAAGAATCTCGTGGATTCGCTTTTGTCACGATGGAAACTAATGGCGATGCCAAGCGCTGTATCAAGTATTTGAACCGCTCTGTTTTTGAAGGTCGCTTGATAACTGTGGAAAAGGCAAAGAGAAGTCGTGGCAGGACTCCAACTCCTGGCAAATACTGTGGTCCAAGAGATAAGCGGGGACAGGGAGGGAGACGATCTCGTAGTTACTCACCTAAGCGATGGCAGGATAGAGATTATCATTCAAGGGACCGGCTAGGAAGATCTCGTTCTCCATACCGTAGGAGGGTGGAAGATTACTCTGACAAATATAGGAAGCGGAGGGATTAG 576 0.4705 MSSAKRARSASASASPVRGRRSRSLSRSRRSRSRSQDSADAENPGNNLYVTGLSTRISDSDLQKYFSKEGKVVDCHLVKDPRTKESRGFAFVTMETNGDAKRCIKYLNRSVFEGRLITVEKAKRSRGRTPTPGKYCGPRDKRGQGGRRSRSYSPKRWQDRDYHSRDRLGRSRSPYRRRVEDYSDKYRKRRD 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00581 191 MobiDBLite consensus disorder prediction 1 52 - -
Pumo3g00581 191 SMART rrm1_1 47 120 IPR000504 GO:0003723
Pumo3g00581 191 SUPERFAMILY RNA-binding domain, RBD 38 151 IPR035979 GO:0003676
Pumo3g00581 191 MobiDBLite consensus disorder prediction 38 52 - -
Pumo3g00581 191 SMART rrm2_1 47 120 IPR003954 GO:0003676
Pumo3g00581 191 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 124 IPR000504 GO:0003723
Pumo3g00581 191 MobiDBLite consensus disorder prediction 1 21 - -
Pumo3g00581 191 MobiDBLite consensus disorder prediction 140 191 - -
Pumo3g00581 191 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 35 186 - -
Pumo3g00581 191 MobiDBLite consensus disorder prediction 122 191 - -
Pumo3g00581 191 CDD RRM_SF 48 120 - -
Pumo3g00581 191 Gene3D - 1 130 IPR012677 -
Pumo3g00581 191 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 117 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00581 Pumo-Chr3 8894330 8897112 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00581 20 124 Eukaryotic Initiation Factors Gene Family AT2G23350 29.524 1.10e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00581 K12897 - gmx:100798472 278.87