Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo3g00570 | ATGGATAAGACGACGTCAGTGGAGGAGCAAAGCGAAAGGAATCAACCCTTCACCTCGTCCTCAGGCTTCGCGGTGGCATCATTGAGCCTTCCCATGGCTCACAAATACAACCAGGACAAGATGATTTGTCGCAAGTGCTATGCTCATCTGCATCCAAGGGCTGTGAACTACCGCAAGAAGAAGTGCGGGCACAGTAATCAGTCAAGGCCAAAGAAGAAGATCAAGTAA | 228 | 0.4956 | MDKTTSVEEQSERNQPFTSSSGFAVASLSLPMAHKYNQDKMICRKCYAHLHPRAVNYRKKKCGHSNQSRPKKKIK | 75 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo3g00570 | 75 | Gene3D | - | 29 | 75 | IPR038587 | - | |
| Pumo3g00570 | 75 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Pumo3g00570 | 75 | Pfam | Ribosomal L40e family | 32 | 74 | IPR001975 | GO:0003735|GO:0005840|GO:0006412 | |
| Pumo3g00570 | 75 | SUPERFAMILY | Zn-binding ribosomal proteins | 30 | 74 | IPR011332 | GO:0006412 | |
| Pumo3g00570 | 75 | SMART | Ribosomal_L40e_3 | 25 | 75 | IPR001975 | GO:0003735|GO:0005840|GO:0006412 | |
| Pumo3g00570 | 75 | FunFam | ubiquitin-60S ribosomal protein L40 | 27 | 75 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo3g00570 | 6 | 75 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 61.429 | 1.27e-24 | 87.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo3g00570 | K02927 | - | bvg:104883357 | 88.9669 |