Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00564 ATGGGTTTGCAAAACCAATTAAACGACGTGTCGTCGGGTTCGATTCCGCTTCTGGTGTTGGCGCAGATAGCGACCTGCGTTAACTACCTCCGTTCCATGCTTTTCGCGCTTTTGCAATCCCTCGGTCTGTGCCGATTCCACACCGACCAAATCGTCGACGAGAGCTTCCTCGCCGCCGTTGGATCCGGGCTTGCCGGACTCATCATGCTCTCCGATCAGCTAACCCTCAGCAACCAATTCTTCCACCACCACGGCGCCGGCGCCGGCGAGGAGCACCCCTGCGTGGTGTGCCAGGCCACCTTCGAGGACGGGGACCAGGTCCGCATGCTCCCCTGCCGCCACGTTTTCCACCGCCGCTGCTTCGACGGGTGGCTCCACCACTACAAGTTCAACTGCCCCCTCTGCCGCTCCCCGCTCTTCTCCGACGAGCGCGTGGCCCTCACCGAACGCCGCCTCGGCCAACAACTCATCTCTTGGTTCTCCCTTCACTGA 492 0.6159 MGLQNQLNDVSSGSIPLLVLAQIATCVNYLRSMLFALLQSLGLCRFHTDQIVDESFLAAVGSGLAGLIMLSDQLTLSNQFFHHHGAGAGEEHPCVVCQATFEDGDQVRMLPCRHVFHRRCFDGWLHHYKFNCPLCRSPLFSDERVALTERRLGQQLISWFSLH 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00564 163 SMART ring_2 94 135 IPR001841 -
Pumo3g00564 163 SUPERFAMILY RING/U-box 89 142 - -
Pumo3g00564 163 PANTHER RING ZINC FINGER PROTEIN-RELATED 83 146 - -
Pumo3g00564 163 Pfam Ring finger domain 94 136 IPR001841 -
Pumo3g00564 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 145 IPR013083 -
Pumo3g00564 163 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00564 Pumo-Chr3 8646895 8647386 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00564 1 163 C3H Transcription Factor Family AT1G15100 47.853 1.66e-46 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00564 K16282 - gmx:100797628 310.842