Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00553 ATGCTGCTCCCTTTTGCTTTCTTCTTTTTTCTTCTTTGCTGCAACTCTCTTGCACCTGCGGTGCATTCTCTCAATGCCGAAGGTTCTGTGCTTTTGACACTAAAGCAGTCCCTCACAGACCCACAAGGCTCCATGAGTAACTGGAATTCCTCTGATGAAAACCCTTGTTCATGGAATGGGATCACTTGCAAGGACCAAACTGTTGTGTCCATTAGCATCCCAAAGGGGAAACTCTATGGTTCTCTTCCTTCTTCTCTGGGATCCCTCTCCCAGCTCCGCCATGTCAACTTCAGGAACAACAAGCTCTTTGGAAACTTGCCTGCACAGCTCTTTCAGGCTCAGGGACTGCAAAGCTTGGTGCTTTATGGCAATTCATTTTCTGGGTCTGTTCCAACTGAGATTCAGAACCTCAGGTACCTTCAAACTCTAGATTTATCACAAAATTTCTTCAATGGGTCATTGCCTGCTGCAATTGTTCAATGCAAGAGACTCAAAACCCTTGTTCTCAGTCAGAACAATTTCACTGGCCCTTTGCCAGATGGGCTTGGTACTGGTTTGTCTTCTCTGGAAAGACTAGACCTTTCTTTCAATCACTTCAATGGGTCAATTCCCAGTGACTTGGGAAATCTGTCAAGCCTGCAAGGAACTGTTGATTTGTCTCATAATCATTTTAGTGGTTCAATTCCAGCTAGCCTTGGTAATCTTCCTGAGAAGGTTTACATTGATCTTACTTACAACAATTTAAATGGTCCAATACCCCAAAATGGTGCTTTGATGAATAGAGGGCCAACTGCTTTTATTGGCAATCCTGGTCTATGTGGTCCTCCTTTGAAGAATTCATGTGCTTCTGATACTCCATCTGCTAGTTCACCTTCCTCATTTCCATTTATTCCTGATAACTACCCACCTCAGGGTACTGGTAATGATTCCAGGGGAAGTGAGAAAAACAAAGGGCTAAGTAAGGGAGCTGTGGTTGGCATTGTTGTGGGTGATATAATTGGAATTTGCCTTTTAGGTTTGCTGTTCTCTTTTTGCTACTCAAGGGTTTGTGGTTTTAACCAGGATCTGGATGAAGATGGGGTTAACAAGGGAAGGAAAGGGAGGGAAGACTGCTTCTGCTTCAGAAAGGATGAATCTGAGGTCCTATCTGATAATAATGTTGAGCAATATGATCTTGTCCCATTAGATTCCCATGTGAACTTTGATTTGGATGAGCTTCTCAAGGCTTCAGCTTTTGTTCTGGGTAAGAGTGGAATAGGGATTATGTACAAAGTGGTGCTTGAAGATGGGCTTGCTTTAGCTGTGAGAAGATTGGGGGAGGGAGGTTCTCAAAGGTTTAAAGAGTTCCAAACAGAGGTAGAAGCAATAGGGAAGTTAAGACATCCAAATATTGCAACTCTGAGAGCCTATTACTGGTCTGTTGATGAGAAGCTTCTCATATATGATTATATACCCAATGGAAGCCTTGCTACAGCAATTCACGGGAAGGCTGGACTTGACACATTCGCACCACTATCTTGGTCCTATAGATTGAAAATCATGAAAGGAACTGCAAGGGGATTGCTCTATCTGCATGAATTTAGCCCCAAAAAATATGTCCATGGAGACCTCAAGCCTAGTAACATACTTCTTGAACACAACATGGAACCCCACATTTCTGACTTTGGAGTTGGGCGCCTTGCAAACATTGCTGGAGGGACTCCAACCTTGCAATCCAACCGGGTGGCCGCAGAGAAACTACAAGGAAGACAGAAGAGCATGTCCACTGAAGTCACAGCCAATGTTTTGGGAAACGGTTATCAGGCTCCAGAAGCACTGAAAGTGGTGAAGCCATCACAGAAGTGGGATGTTTACTCATATGGTGTGATATTGTTGGAAATGATCACAGGAAGATCATCCATTGTCCTAGTGGGGAACTCAGAAATGGACCTTGTTCAGTGGATTCAGTTCTGCATTGAGGAAAAGAAGCCACTCTTGGAGGTGTTAGACCCTTGCTTGGCTGAAGATGCAGATAAGGAAGAGGAGATTATTGGAGTTTTGAAGATTGCAATGGCTTGTGTCCATAACAGCCCTGAAAAGAGACCTACAATGAGGCACGTGCTTGATGCTTTGGATAGACTGACTATTTCCTCTGATTGA 2139 0.4381 MLLPFAFFFFLLCCNSLAPAVHSLNAEGSVLLTLKQSLTDPQGSMSNWNSSDENPCSWNGITCKDQTVVSISIPKGKLYGSLPSSLGSLSQLRHVNFRNNKLFGNLPAQLFQAQGLQSLVLYGNSFSGSVPTEIQNLRYLQTLDLSQNFFNGSLPAAIVQCKRLKTLVLSQNNFTGPLPDGLGTGLSSLERLDLSFNHFNGSIPSDLGNLSSLQGTVDLSHNHFSGSIPASLGNLPEKVYIDLTYNNLNGPIPQNGALMNRGPTAFIGNPGLCGPPLKNSCASDTPSASSPSSFPFIPDNYPPQGTGNDSRGSEKNKGLSKGAVVGIVVGDIIGICLLGLLFSFCYSRVCGFNQDLDEDGVNKGRKGREDCFCFRKDESEVLSDNNVEQYDLVPLDSHVNFDLDELLKASAFVLGKSGIGIMYKVVLEDGLALAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIATLRAYYWSVDEKLLIYDYIPNGSLATAIHGKAGLDTFAPLSWSYRLKIMKGTARGLLYLHEFSPKKYVHGDLKPSNILLEHNMEPHISDFGVGRLANIAGGTPTLQSNRVAAEKLQGRQKSMSTEVTANVLGNGYQAPEALKVVKPSQKWDVYSYGVILLEMITGRSSIVLVGNSEMDLVQWIQFCIEEKKPLLEVLDPCLAEDADKEEEIIGVLKIAMACVHNSPEKRPTMRHVLDALDRLTISSD 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00553 712 Gene3D Ribonuclease Inhibitor 78 284 IPR032675 -
Pumo3g00553 712 Gene3D Ribonuclease Inhibitor 17 77 IPR032675 -
Pumo3g00553 712 Gene3D Phosphorylase Kinase; domain 1 376 483 - -
Pumo3g00553 712 SMART LRR_typ_2 89 113 IPR003591 -
Pumo3g00553 712 SMART LRR_typ_2 137 161 IPR003591 -
Pumo3g00553 712 SMART LRR_typ_2 186 210 IPR003591 -
Pumo3g00553 712 Gene3D Transferase(Phosphotransferase) domain 1 484 711 - -
Pumo3g00553 712 SUPERFAMILY L domain-like 26 277 - -
Pumo3g00553 712 MobiDBLite consensus disorder prediction 283 315 - -
Pumo3g00553 712 ProSiteProfiles Protein kinase domain profile. 408 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00553 712 SUPERFAMILY Protein kinase-like (PK-like) 413 704 IPR011009 -
Pumo3g00553 712 SMART serkin_6 413 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00553 712 FunFam Leucine-rich repeat protein kinase family protein 484 710 - -
Pumo3g00553 712 FunFam Leucine-rich repeat receptor-like protein kinase 188 283 - -
Pumo3g00553 712 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 184 - -
Pumo3g00553 712 CDD STKc_IRAK 414 707 - -
Pumo3g00553 712 Pfam Leucine Rich Repeat 188 210 IPR001611 GO:0005515
Pumo3g00553 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 532 544 IPR008271 GO:0004672|GO:0006468
Pumo3g00553 712 PANTHER OS05G0588300 PROTEIN 140 706 - -
Pumo3g00553 712 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Pumo3g00553 712 FunFam Leucine-rich repeat receptor-like protein kinase 391 483 - -
Pumo3g00553 712 Pfam Protein kinase domain 414 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00553 Pumo-Chr3 8459767 8462563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00553 1 712 Receptor kinase-like Gene Family AT2G01210 67.082 0.0 974
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pumo3g00553 Pkinase 2.6e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00553 - - gmx:100807517 1267.29