Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00545 ATGAACCAAAACACCCTCTTCTTTATCCTTAAGCCCCTCTCTTCTCCCCTGATTCATTCCTACATCATCCTCTTCTATCTCCTTGCCAGAAACACCTCTTGTGATGTGGACCCAAAATTTCTTGCATGTCCACCTAAAACCTGCGCCAACAACAACCAAAGTATAAGCTATCCGTTTTACATCGAAGGAATACAGCCACCTTATTGTGGGAACCCTGGTTTTGGAATCTCTTGTGGCCCAAATGGTTTTCCAATCCTCAATCTGTCTAATACCCAATACATCATTCACCAAATATTCTACGAAAATCATACACTGCGAGTGTCCAATGCTGCGTTTTCAATTTCACAACCAAACACCACCAAAGGTTGTCTTCCTGCTACGCAGAATCTCACTCTTCCTAGTACCCGCCTGTTCGATCTTGCTCCGAATCAAAAGGACATGGTATTGTTCTACGGATGTGAGTCATTACCTTCGCTGCAAGAACACAGAGTTGGTTGTTCTGCAGAAAACGCAACGAGTTCAGTTTTGGCATTGTATAAAGAGGATAAAAATATAAGCTTTGTGTCAAAGAATTGCAAGGGCGAGGTTGTTAACATGACGGTGGAAGATGGAATAGGAGGGATTCAAGAGGCGCTAAGAAAAGGGTTCTTGCTTACGTGGACGGCCAGTAACTGCAGCGTGTGCAACAGCACTGGAGGGAGGTGCGGCTTCGATTCGGAGATGTACACTTTCAGGTGTTACTGCACTGACAGAGTTCATTCTGCCAAATGTGGTCCTGATGATCCAGTTACGATGATTACGAAGAAAGAAAGGTTGAGTTTGAAGGTCAAGCTGGGTTTAGGTTTAGGTATTGGAATCCCATGCATGTTGGTAATTGGGTTGCTATTTCTCTTTCTACACTACAAACGAAAAGATGCTACCTCAGGTGGACAATTGGAGTCAAGAGATTCTTATTCTGATTCCTCCTCAAATCCTCATCGAGCAAGTAGTAGCGAGTACTTTAGAGTTCCACTCTTCTCTTACGAGCAGCTTAAACAAGCAACAAACAATTTCGACCATACTAAAGAACTTGGAGATGGAGGCTTCGGTACTGTCTACTATGGGAAACTCCCAGATGAACGGGAAGTTGCGGTGAAGCGCTTATACGAGCACAACTGGAAGCGAGTAGAACAGTTCATGAACGAAGTAAACATCCTCACACGTTTGCGTCACAAAAATCTTGTGTCACTCTATGGCTGCACTTCAAGGCACAGCCGTGAACTCCTGCTTGTGTATGAATACATTCCAAACGGCACCGTAGCGTGTCATCTCCACGGTGAATTAGCCAAGCCCGGCTCCCTACCGTGGTCTACGCGGATGAAAATTGCCACAGAGACTGCTAGTGCATTGGCTTATCTCCACGCTTCCGACATCATTCACCGTGACGTGAAAACAAACAACATTCTCCTCGACAACAATTATTGTGTTAAGGTAGCAGATTTTGGGCTTTCAAGAGACTTGCCCAACGATGTCACACATGTCTCCACAGCTCCACAGGGGTCCCCGGGTTACCTTGACCCTGAATATTACAATTGCTACCAGCTTACTAGTAAGAGTGATGTGTATAGTTTTGGGGTTGTGCTTATTGAGCTAATATCATCCAAGCCTGCAGTTGATATGAACAGGAGCAGGGATGAGATTAACTTGTCGAATTTAGCCGTAAGGAAGATTCAAGAAAGTGCAATTAATGAGCTGGTTGATCCTTCTCTTGGTTTTGATTCAGATTGTAGGGTCACGGGGATGATAGTTTCAGTGGCAGGGTTGGCTTTTCAGTGTTTGCAAAGGGAAAAGGATTTGAGACCTTCTATGGATGAAGTGTTGCATGAACTGAAGACAATTGAGAGTGGGAAGGATGATGGGATTGTGGTTCAAGAGGAGGGTGATGTTAATAATGGTGTTGGAGTTTCAGATAGTTGTGCACATTCACCACCACCACCAGCCTCACCCGAGTGGGAAGAAGTTGGATTGTTGAAGAATATAAAGCCTACTTCCCCAAACACTGTCACTGATAAATGGGAAAGTAAATGTACTACGCCTAATATCAGTGGTTAA 2091 0.4438 MNQNTLFFILKPLSSPLIHSYIILFYLLARNTSCDVDPKFLACPPKTCANNNQSISYPFYIEGIQPPYCGNPGFGISCGPNGFPILNLSNTQYIIHQIFYENHTLRVSNAAFSISQPNTTKGCLPATQNLTLPSTRLFDLAPNQKDMVLFYGCESLPSLQEHRVGCSAENATSSVLALYKEDKNISFVSKNCKGEVVNMTVEDGIGGIQEALRKGFLLTWTASNCSVCNSTGGRCGFDSEMYTFRCYCTDRVHSAKCGPDDPVTMITKKERLSLKVKLGLGLGIGIPCMLVIGLLFLFLHYKRKDATSGGQLESRDSYSDSSSNPHRASSSEYFRVPLFSYEQLKQATNNFDHTKELGDGGFGTVYYGKLPDEREVAVKRLYEHNWKRVEQFMNEVNILTRLRHKNLVSLYGCTSRHSRELLLVYEYIPNGTVACHLHGELAKPGSLPWSTRMKIATETASALAYLHASDIIHRDVKTNNILLDNNYCVKVADFGLSRDLPNDVTHVSTAPQGSPGYLDPEYYNCYQLTSKSDVYSFGVVLIELISSKPAVDMNRSRDEINLSNLAVRKIQESAINELVDPSLGFDSDCRVTGMIVSVAGLAFQCLQREKDLRPSMDEVLHELKTIESGKDDGIVVQEEGDVNNGVGVSDSCAHSPPPPASPEWEEVGLLKNIKPTSPNTVTDKWESKCTTPNISG 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00545 696 ProSiteProfiles Protein kinase domain profile. 351 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00545 696 Pfam Wall-associated receptor kinase C-terminal 178 250 IPR032872 -
Pumo3g00545 696 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Pumo3g00545 696 FunFam Wall-associated receptor kinase-like 20 428 634 - -
Pumo3g00545 696 MobiDBLite consensus disorder prediction 675 696 - -
Pumo3g00545 696 SUPERFAMILY Protein kinase-like (PK-like) 325 623 IPR011009 -
Pumo3g00545 696 Gene3D Transferase(Phosphotransferase) domain 1 428 635 - -
Pumo3g00545 696 MobiDBLite consensus disorder prediction 311 329 - -
Pumo3g00545 696 MobiDBLite consensus disorder prediction 308 329 - -
Pumo3g00545 696 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 323 427 - -
Pumo3g00545 696 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 22 690 IPR044652 GO:0004672
Pumo3g00545 696 Pfam Wall-associated receptor kinase galacturonan-binding 43 108 IPR025287 GO:0030247
Pumo3g00545 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Pumo3g00545 696 SMART serkin_6 351 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00545 696 Pfam Protein tyrosine and serine/threonine kinase 354 567 IPR001245 GO:0004672|GO:0006468
Pumo3g00545 696 Gene3D Phosphorylase Kinase; domain 1 322 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00545 Pumo-Chr3 8366633 8378376 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00545 224 696 Receptor kinase-like Gene Family AT1G25390 55.115 2.32e-165 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Pumo3g00545 PK_Tyr_Ser-Thr 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00545 - - gmx:100792345 944.495