Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00544 ATGAATGAAATCAATATCCTCACACGCTTGCGCCACGAAAATCTAGTGTCTCTTTATGGCTGCACTTCACGTCATAGTCGTGAACTATTGCTTGTGTATGAATACATTTCAAATGGGACCGTGGCCAGTCACCTCCATCATCATGGATCATCAAATCCTGGCTTTTTGCCATGGCCAATTCGATTGAAAGTGGCCATAGAGACTGCTACTGCATTGGCCTACCTCCATGCCTCTGACATAATTCACCGTGATGTCAAAACAAACAACATTCTCCTTGACAACACTTTTTGTGTTAAAGTTGCAGATTTTGGACTGTCAAGACTGTTCCCCAATGATGTCACCCACGTTTCCACAGCTCCACAAGGCACCCCTGGCTATGTTGATCCGGAATATCACCGATGCTATCAGCTAACTAGTAAGAGTGATGTGTATAGTTTTGGGGTGGTGCTTATTGAGCTAATATCATCTATGCCACCAATTGATCTGACCCGGCATAAGGATGAAATAAACTTGGCAGATCTAGCAATAAGGAAGATTCAAAAAAGTGCAATTGCTGAGCTAGTGGATCCTTCCCTTGGTTATGAGTCAAATAGTGATGTTAAGAGGCAAATAACTGTAGTAGCAGAATTGGCTTTCCGGTGCTTGCAACGGGACAAAGAATTGAGACCCTCCATGGATGAAGTTTTGGAGGTGCTGAAGAGAACTGAAGAGGAAGTAGAAGTTAACGGTGAATGTCCATTATCTCCTCCTTCACCAGATCATGATGAGGTGAAATTGTTGAGGAATGTGAAGTTGGTTTCTTCGCCAAAGGCTGTGACAGATAAATGGGATAGCGAATCCACTAGTCCTAATGTTAGTGGTCAATCGCAAGCCAAATCTAATATGCCATTTTGTAACTTATCACAAGCATGTATATAA 918 0.4248 MNEINILTRLRHENLVSLYGCTSRHSRELLLVYEYISNGTVASHLHHHGSSNPGFLPWPIRLKVAIETATALAYLHASDIIHRDVKTNNILLDNTFCVKVADFGLSRLFPNDVTHVSTAPQGTPGYVDPEYHRCYQLTSKSDVYSFGVVLIELISSMPPIDLTRHKDEINLADLAIRKIQKSAIAELVDPSLGYESNSDVKRQITVVAELAFRCLQRDKELRPSMDEVLEVLKRTEEEVEVNGECPLSPPSPDHDEVKLLRNVKLVSSPKAVTDKWDSESTSPNVSGQSQAKSNMPFCNLSQACI 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00544 305 SMART serkin_6 1 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00544 305 SUPERFAMILY Protein kinase-like (PK-like) 1 254 IPR011009 -
Pumo3g00544 305 MobiDBLite consensus disorder prediction 273 292 - -
Pumo3g00544 305 ProSiteProfiles Protein kinase domain profile. 1 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00544 305 MobiDBLite consensus disorder prediction 271 292 - -
Pumo3g00544 305 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 281 IPR044652 GO:0004672
Pumo3g00544 305 FunFam Wall-associated receptor kinase-like 20 36 244 - -
Pumo3g00544 305 Gene3D Transferase(Phosphotransferase) domain 1 37 247 - -
Pumo3g00544 305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 80 92 IPR008271 GO:0004672|GO:0006468
Pumo3g00544 305 Gene3D Phosphorylase Kinase; domain 1 1 36 - -
Pumo3g00544 305 Pfam Protein kinase domain 2 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00544 Pumo-Chr3 8332932 8333849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00544 1 287 Receptor kinase-like Gene Family AT1G25390 63.636 7.38e-130 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Pumo3g00544 Pkinase 4.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00544 - - aprc:113871893 500.745