Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00543 ATGAGGAAAAATAGAGTTTCGACTCGGAAGCTAGCGTTGATGCTAGGTGTCGGTGTTGGACCATGGATCATTGTTGGATTGTTCCTCACGTATCGGCACTGCAAACGGAATTATGGTCAATCCAGCAACACTTGTGCTGATCCCTACTCAAGTCGTGACACGGAGAGTGACAGGATCTTCTTTGGGGTACCCGTTTTCTCCTATAAGGAGCTTCAAGAAGCAACAAACAATTTTGACCCCACTAGAAAGCTAGGAGATGGAGGCTTTGGCACTGTTTACTATGGAACACTGAGAGATGGCAGGGAAGTTGCAATCAAGCATCTATTTGAGCACAATTACAAGAGAGTGGAACAGTTTATGAATGAAATTGAGATCCTTACTCGCCTACGCCACAGAAATCTTGTGTCCCTCTATGGTTGCACTTCACGTCACGGCCAAGAGCTACTGCTTGTATATGAATACGTTCTTAATGGCACAGTTGCTAGCCATCTCCATGGTGATTTAGCAAGGGTTGGTTTGTTGACATGGCCTATTCGAATGCAAATTGCCATAGAGACAGCTACTGCATTGGCCTATCTCCATGCTTCTAACATCATCCACCGTGATGTTAAAACCAATAACATTTTACTTGACACTAATTTCTCAGTTAAGGTAGCAGATTTTGGGCTTTCAAGATTGCTCCCCAATGATGTAAGCCATGTCTCCACAGCTCCACAAGGGTCTCCGGGGTATCTTGACCCTGAATATTTCCAATTCTATAGGCTCACAAACAAGAGTGATGTGTATAGCTTTGGGGTTGTGCTTATGGAGCTAATATCATCTATGCCAGCAGTTGATGCAACCAGGGAAAGAGATGAAGTTAACTTGGCAAATTTTTGCATGAAAAAGATTCATAAAGGAAAGCTTAGTGAGCTTGTAGATCCATCCTTTGGTTTTGAGTCAGACCAAGTAGTTAAAAGGATGCTAACTTCAGTGGCAGGATTGGCCTTTCGGTGTGTGCAAGGAGACAATGAATTAAGGCCTTCTATGGATCAAGTTCTGGAAACCCTCGAGAAAATTCAAAGTGGGAATTATGAGTCTGAGAATCTAGAGAAAGGAGATGATGATGGTGGTGGTGTTGTCTCTTCCACTTCCTCCAGCAAAGAGGTACATCAACCACCACCAGCTTCACGGGATTGGGGTCAAGCTGGAATTTTGATGAATAAGTTACCAGCTTCGACAATGTCCTTGACTGAGAAACGGGAAAGTGAATCTACCACGTCCAATGTCAGTGGTTAA 1278 0.4366 MRKNRVSTRKLALMLGVGVGPWIIVGLFLTYRHCKRNYGQSSNTCADPYSSRDTESDRIFFGVPVFSYKELQEATNNFDPTRKLGDGGFGTVYYGTLRDGREVAIKHLFEHNYKRVEQFMNEIEILTRLRHRNLVSLYGCTSRHGQELLLVYEYVLNGTVASHLHGDLARVGLLTWPIRMQIAIETATALAYLHASNIIHRDVKTNNILLDTNFSVKVADFGLSRLLPNDVSHVSTAPQGSPGYLDPEYFQFYRLTNKSDVYSFGVVLMELISSMPAVDATRERDEVNLANFCMKKIHKGKLSELVDPSFGFESDQVVKRMLTSVAGLAFRCVQGDNELRPSMDQVLETLEKIQSGNYESENLEKGDDDGGGVVSSTSSSKEVHQPPPASRDWGQAGILMNKLPASTMSLTEKRESESTTSNVSG 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00543 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Pumo3g00543 425 SMART serkin_6 78 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00543 425 Pfam Protein tyrosine and serine/threonine kinase 81 350 IPR001245 GO:0004672|GO:0006468
Pumo3g00543 425 Gene3D Phosphorylase Kinase; domain 1 50 154 - -
Pumo3g00543 425 ProSiteProfiles Protein kinase domain profile. 78 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00543 425 CDD STKc_IRAK 84 353 - -
Pumo3g00543 425 SUPERFAMILY Protein kinase-like (PK-like) 61 351 IPR011009 -
Pumo3g00543 425 Gene3D Transferase(Phosphotransferase) domain 1 156 365 - -
Pumo3g00543 425 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 18 415 IPR044652 GO:0004672
Pumo3g00543 425 MobiDBLite consensus disorder prediction 402 425 - -
Pumo3g00543 425 FunFam Wall-associated receptor kinase-like 20 155 363 - -
Pumo3g00543 425 MobiDBLite consensus disorder prediction 357 425 - -
Pumo3g00543 425 ProSitePatterns Protein kinases ATP-binding region signature. 84 106 IPR017441 GO:0005524
Pumo3g00543 425 FunFam receptor-like protein kinase FERONIA 42 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00543 Pumo-Chr3 8120616 8123909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00543 10 425 Receptor kinase-like Gene Family AT1G25390 55.370 2.70e-156 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Pumo3g00543 PK_Tyr_Ser-Thr 4.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00543 - - gmx:100778085 729.939