Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00535 ATGGCAGCAACACTCTCTCACCTCCTTGCTGTTCTCCATTTTCTTCTTCTCATGCTTCAAGGTTTTAGTAACCCAGATTTCGACGCTCTTGTGGCCTTCAAAACCGCTTCAGACACTTCCCAAAAGCTCACTACATGGAACATTAACAGCACCAACCCGTGTTCCTGGAGCGGCGTGTCATGCATTCGAGACCGAGTCTCGCGACTCGTTCTCGAAAACCTCGACCTCGAAGGTTCCATTCACCCTTTAACCTCTCTAACTCAGCTCCGAGTTCTGAGTCTCAAGGGGAACCGTTTCTCCGGTCCCGTTCCCAACCTCTCCAACCTCACCGCCCTCAAACTCCTCTTCTTATCACGCAATGCCTTCTCCGGCGAGTTTCCAGCGACCGTCACGTCGCTCTTCCGCCTCTACCGTCTCGATCTGTCGAACAACAACTTCTCCGGCGAGATTCCGGCGACGGTCAGCCACTTGACCCACCTCCTCACTCTCCGCCTCGACGGGAACAAGTTCTCCGACCACATTCCCGACGTGAACCTCCCAAGCCTCCAAGAGTTCAACGTCTCCGGCAACCGCCTCTCCGGCGAGATACCCAAGTCCTTATCAAATTTCCCAGAATCCTCATTCGGGAAAAACCCGTTTCTCTGCGGAGCCCCAATTAAAAAATGCGCACCCGACCCGACAAAACCCGGATCCGAAGGCGCCATTGCTTCACCACTGATACCACAAAACAACCACCCAACAACCACTGTATCATCTTCCCCAGGTTCAATGCCAAAAACATCAACATCAACAACAAGTAGTAAAAGCCACGAAAAGGGTGCTTCGAAGATAAGTCCGGTGGCGCTTATAGCTATAATAGTGGGCGATGTTTTGGTTCTTGGCATAGTTTCTTTGCTTTTGTACTGCTACTTCTGGAGGAACTATAAGTTGAAGGAGGGGAAAGGGTCGAAGCTTTTTGAGAGTGAGAAGATTGTGTATTCGTCGAGTCCGTACCCTGCTCAGGGAGGGTTCGAGAGGGGTCGAATGGTGTTCTTTGAAGGAGACAAAAGGTTCGAGCTTGAGGACTTGCTTCGAGCCTCTGCTGAAATGCTTGGAAAGGGAGGGTTTGGGACTGCGTACAAAGCGGTGCTCGATGATGGGAACGTGGTTGCGGTGAAGAGACTCAAGGACGCGCAGATTACAGGGAAGAGGGAGTTCGAGCAACACATGGAGGTGTTGGGAAGGTTGAGACACCCCAATGTTGTTAGTTTGAGGGCTTACTATTTCGCGCGAGAGGAGAAGCTGTTGGTGTACGATTACATGCCCAATGCCACCTTGTTCTGGCTCCTTCACGGGAACCGAGGACCCGGACGAACCCCACTGGACTGGACCACGAGGCTCAAGATAGCAGCTGGAGCGGCGCGAGGTGTGGCTTTCATTCATAACTCGTGCAAGTCCCTTAGACTCACCCACGGTAACATCAAATCCACCAACGTCTTACTCGACAAGCAGGGGAATGCACGCGTGTCTGATTTTGGGCTCTCCGTGTTCGCGGGCCCAGGCCCAGTGGGTGGCAGATCCAACGGCTACCGTGCGCCGGAGGCATCGGAGGGTCGAAAACAGACGCAGAAGTCTGACGTGTACTCTTTCGGTGTGCTACTGCTGGAGCTGCTCACAGGGAAGTGCCCCTCCGTGGTGGAGAGTGCAGGGAGTGCTTACGGTGGGGTCGTGGACCTACCGAGGTGGGTCCAGTCAGTGGTGAGGGAGGAGTGGACCGCTGAGGTGTTTGATTTGGAGCTCATGAGGTATAAGGACATTGAGGAGGAGATGGTGGGGCTGCTTCAGATTGCGATGACGTGTACCGCGGCTGCACCTGATCAGCGGCCCAGGATGAGCCACGTCGTCAAGATGATTGAGGAGTTGCGTGGGGTCGAGGTGTCACCGTGTCATGACTCGTTGGATTCGGTGTCTGAGTCACCTTCCTTGTCTGAAGATGCGTGTGGAACAACAAGTCAGTGA 1998 0.5375 MAATLSHLLAVLHFLLLMLQGFSNPDFDALVAFKTASDTSQKLTTWNINSTNPCSWSGVSCIRDRVSRLVLENLDLEGSIHPLTSLTQLRVLSLKGNRFSGPVPNLSNLTALKLLFLSRNAFSGEFPATVTSLFRLYRLDLSNNNFSGEIPATVSHLTHLLTLRLDGNKFSDHIPDVNLPSLQEFNVSGNRLSGEIPKSLSNFPESSFGKNPFLCGAPIKKCAPDPTKPGSEGAIASPLIPQNNHPTTTVSSSPGSMPKTSTSTTSSKSHEKGASKISPVALIAIIVGDVLVLGIVSLLLYCYFWRNYKLKEGKGSKLFESEKIVYSSSPYPAQGGFERGRMVFFEGDKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQITGKREFEQHMEVLGRLRHPNVVSLRAYYFAREEKLLVYDYMPNATLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGVAFIHNSCKSLRLTHGNIKSTNVLLDKQGNARVSDFGLSVFAGPGPVGGRSNGYRAPEASEGRKQTQKSDVYSFGVLLLELLTGKCPSVVESAGSAYGGVVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMTCTAAAPDQRPRMSHVVKMIEELRGVEVSPCHDSLDSVSESPSLSEDACGTTSQ 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00535 665 SUPERFAMILY Protein kinase-like (PK-like) 362 631 IPR011009 -
Pumo3g00535 665 Gene3D Phosphorylase Kinase; domain 1 338 433 - -
Pumo3g00535 665 MobiDBLite consensus disorder prediction 645 665 - -
Pumo3g00535 665 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 434 641 - -
Pumo3g00535 665 MobiDBLite consensus disorder prediction 237 271 - -
Pumo3g00535 665 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 636 IPR046959 -
Pumo3g00535 665 FunFam Leucine-rich repeat receptor-like protein kinase 23 176 - -
Pumo3g00535 665 SUPERFAMILY L domain-like 35 219 - -
Pumo3g00535 665 Pfam Protein kinase domain 362 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00535 665 ProSitePatterns Protein kinases ATP-binding region signature. 364 386 IPR017441 GO:0005524
Pumo3g00535 665 Gene3D Transferase(Phosphotransferase) domain 1 434 647 - -
Pumo3g00535 665 MobiDBLite consensus disorder prediction 224 271 - -
Pumo3g00535 665 CDD STKc_IRAK 364 634 - -
Pumo3g00535 665 FunFam pollen receptor-like kinase 1 331 433 - -
Pumo3g00535 665 MobiDBLite consensus disorder prediction 642 665 - -
Pumo3g00535 665 Pfam Leucine rich repeat N-terminal domain 24 61 IPR013210 -
Pumo3g00535 665 Gene3D Ribonuclease Inhibitor 24 177 IPR032675 -
Pumo3g00535 665 ProSiteProfiles Protein kinase domain profile. 358 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00535 665 Gene3D Ribonuclease Inhibitor 178 223 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00535 Pumo-Chr3 7832201 7835523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00535 26 665 Receptor kinase-like Gene Family AT1G68400 68.037 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pumo3g00535 Pkinase 9.9e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00535 - - gmx:100779158 1200.65