Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00511 ATGAAATTAAGTTGCAATGGGTGTCGCATACTTCGCAAAGGTTGCAGTGACAATTGCATCATCAGGCCTTGTCTCGAGTGGATTAACTCTCCTGAGTCCCAAGCCAACGCCACCCTTTTCCTTGCAAAATTCTATGGTCGTACTGGCTTATTCAACCTCATCACTGCTGCTCCCCAACACCTTGGCCCAGTTGTGTTTAGGTCATTATTGTATGAGGCATGTGGGAGATTAGTGAATCCCACTTATGGGTCACTAGGTTTATTTTGGACTGGGGAATGGGACCAATGTGAAGCTGCAGTTGACGCCGTGCTAACTGGGTCCAAAATCAATGGTGTGGCACCTTTTGATTGGCATACCTCAGGGACATTTGCTAATGATCATATTCTCTCAACATGTGATATACGCCATATGCCAAAGGGGATCAATGTGGATGGCATGAGAGGTAGAAATGAGTTCAAGAAAGTCGGGCAAGTTATCAAACCTAAACCACAACTGGGTCCGATGGACTTGACTGTGTTGTGGAAACCCAATTGGCAGAGTGGGAGCATGGAAGCTATGGAGGCTTCATTGGTAAGCCAAGATGAGTTGAACCGAGTCGGTGAAACCGAGTTGGACTTGGAACTCGCTCTTGGCTTTAGTTGCCAATCAACCTATGGCAAGAAAACACATTATTAA 675 0.4593 MKLSCNGCRILRKGCSDNCIIRPCLEWINSPESQANATLFLAKFYGRTGLFNLITAAPQHLGPVVFRSLLYEACGRLVNPTYGSLGLFWTGEWDQCEAAVDAVLTGSKINGVAPFDWHTSGTFANDHILSTCDIRHMPKGINVDGMRGRNEFKKVGQVIKPKPQLGPMDLTVLWKPNWQSGSMEAMEASLVSQDELNRVGETELDLELALGFSCQSTYGKKTHY 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00511 224 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 162 - -
Pumo3g00511 224 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Pumo3g00511 224 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00511 Pumo-Chr3 7449933 7450797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00511 1 142 AS2 family AT3G02550 58.451 1.56e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo3g00511 LOB 2.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00511 - - gmx:100779034 394.43