Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00510 ATGAGTTCAGCTAAGAACGCCGCAAACGCGGTTGGGGGCAAAACGGCAAGAGCATGTGACAGCTGCATAACGAAACGGGCACGTTGGTACTGTGCTGCAGATGATGCTTTTCTCTGCCAAGCTTGTGACTCTTCGGTTCACTCGGCCAACCCGTTGGCTCGGAGACACGAACGAGTCCGCTTGAAAACGGCGTCGTACAAGTCCACCACTGATGAACAACAACAACAACCTCCCACGTGGCACACTAAGAAACCTCGAACGCCGAGACATGGGAAACATTCTCGTAACAGCAACCCCTTCCATTTGGTTCCTGAAGTGGGTTCGGAAGAGGCGAATTCCCATGACGAGAACGAGGAGCAGCTTCTTTATAGGGTCCCCATATTCGACCCTTTTGTTGCTGAGCTATGTGGGACTAATAGTTCTCCTTCTTCGGTGACTTCGACTGATCAAGGAGTAGCAGCTGTTGCTGCTGAGGTTGAAAACAAAGGGATTCAGAGCAGTGTTTTTTGTAGCAATGAGATGGAAAACTTGCATGGGATGCTTCCTTCTGATGCAGAACTTGCAGAGTTTGCTGCTGATGTTGAGAGCTTGTTGGGTAGGGGGCTTGAAAACGAGTGCGTGGGGATGGAAGAATTGGGACTGGTTGATGCGAAAGAGGAGGAGTGTTCGGTGGGTAGTGGGAAGGTGAAGGTGGAAGAGGAAGAGATCCCTGAGATGGAGATGGAGATGGAGATGGTGGGAAGAGATCAATCGTTTGAGCTGAACTTTGATTATGAAACGTGTGAAGAGGTGAAGGAGATAAAGGTTTGTGATTTGGATTTGGATTTGGGCAAAGAAAAGGGGAATGATGATGAGGTGAAAAGGAACAAGATATCGTTGCAGCTAGATTATGAGGCAGTAATCATCGCCTGGGCTAGCCAGAAGTCTCCGTGGACCACTGGTGACAAACCAAACTTGGACCCTGACGAGTGCTGGCACGAATGCATGGAAACTTGTGGAACGGCATTTCATCATCCTTACGGTGAAATGGGTGGATTTGGGATTCATCCAGTGGTAATAGACGGGGGCAGAGAGGCAAGGGTGTCAAGGTACAGAGAAAAGCGCCGAACAAGGTTGTTCTCGAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCCAGAATGAAGGGGAGGTTTGTCAAGAGGGCTTCCTTTGCAGCTCCAACATTTCCTTTGCTAAATAAATAA 1239 0.4859 MSSAKNAANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHERVRLKTASYKSTTDEQQQQPPTWHTKKPRTPRHGKHSRNSNPFHLVPEVGSEEANSHDENEEQLLYRVPIFDPFVAELCGTNSSPSSVTSTDQGVAAVAAEVENKGIQSSVFCSNEMENLHGMLPSDAELAEFAADVESLLGRGLENECVGMEELGLVDAKEEECSVGSGKVKVEEEEIPEMEMEMEMVGRDQSFELNFDYETCEEVKEIKVCDLDLDLGKEKGNDDEVKRNKISLQLDYEAVIIAWASQKSPWTTGDKPNLDPDECWHECMETCGTAFHHPYGEMGGFGIHPVVIDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAAPTFPLLNK 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00510 412 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Pumo3g00510 412 MobiDBLite consensus disorder prediction 65 101 - -
Pumo3g00510 412 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 7 401 - -
Pumo3g00510 412 SMART bboxneu5 14 61 IPR000315 GO:0008270
Pumo3g00510 412 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Pumo3g00510 412 MobiDBLite consensus disorder prediction 66 82 - -
Pumo3g00510 412 CDD Bbox1_BBX-like 18 61 - -
Pumo3g00510 412 ProSiteProfiles CCT domain profile. 357 399 IPR010402 GO:0005515
Pumo3g00510 412 Pfam CCT motif 357 399 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00510 Pumo-Chr3 7446023 7448170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00510 5 399 C2C2-CO-like Transcription Factor Family AT1G25440 47.653 2.08e-105 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pumo3g00510 zf-B_box 8.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00510 - - gmx:100782921 706.827