Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00508 ATGCCCGAGTCTCGGAAACAACCGGCTTCTAGACCGAAGCAAAAGCTTCACCACTCCTTGCAAGAGTCCAAGGCGATGAGAAAACTGCGCATCGTTTACAACGATCCTGATGCTACTGATTCATCCGAAGATGAGTCTGAGAGGGTTCAGAACCCGAGAAGAGTAAAAAGAAGCGTGTGCGAGATCTCTCTTCCCCCTCTTCCTCAAACATTCGCCACTCCTGAAACCAGTTCCTGTGAGGTGAATAGCAACAAAAATGCAATGATGAGGGTTTGCACTGAATGTCAACCCCAGAGTAAGAAGAGGGTTTTGACTCAAACCCCATCAACCTCAACGAGGAGGAACACTTCTGGGAAATACAGAGGTGTTAGGCAGAGAAAATGGGGTAAATGGGCTGCTGAGATTCGTGACCCGTTTCAGAACACTCGTATTTGGCTCGGCACTTTCAACACTGCAGAAGAGGCTTCCCAAGCCTATGAGGCCAGAAGGCTTGAGTTTGCAGCTATGGCAAAGGCTCAAGCTTACAAAAGTGCTTCTGGACCTTCTGCTTCTGAACCTTCTGATAAGAGTAATTGCTGTAACTCTTCTGCTGCTAATGCAGCTGCTGCTGCTGCTGATGTGTCTGTATCTGAGAAGTTTTCTACCACTTCTGATGACTCAGAAGAGAGTGTGTTGTCACACAATTCACCATCCTCTGTGCTTGAGTTGGATACCTCGGCTTCCAAATCCATTGAAAAGGGTAATGTTTCAACTATGGAGGAGGCTAATGATTTGGTGGCTGAACTTGCAGGGCTAGAGATACCAGATTTGAGTCTGTTGAGCATGCCACCACCATCTTCTGCTGGGATTGAGCCAAACTTTGGGCTTGATTTTGATTGGCTATCGTTTGATGATTATGGACAGGGTTTTGATGATTTCGGTGGCTTGGAAGATATTCAAATTTGTGGGTTTGATGACAATGAGCCTAGTGAGCTTCCTGATTTCGATTTTGGTGATTTTGGTGCTGATGAGTTTGCTGGTTGGACTGAGGAGCCCCTCAATATACCTTGTGCCTAA 1056 0.464 MPESRKQPASRPKQKLHHSLQESKAMRKLRIVYNDPDATDSSEDESERVQNPRRVKRSVCEISLPPLPQTFATPETSSCEVNSNKNAMMRVCTECQPQSKKRVLTQTPSTSTRRNTSGKYRGVRQRKWGKWAAEIRDPFQNTRIWLGTFNTAEEASQAYEARRLEFAAMAKAQAYKSASGPSASEPSDKSNCCNSSAANAAAAAADVSVSEKFSTTSDDSEESVLSHNSPSSVLELDTSASKSIEKGNVSTMEEANDLVAELAGLEIPDLSLLSMPPPSSAGIEPNFGLDFDWLSFDDYGQGFDDFGGLEDIQICGFDDNEPSELPDFDFGDFGADEFAGWTEEPLNIPCA 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00508 351 MobiDBLite consensus disorder prediction 103 118 - -
Pumo3g00508 351 MobiDBLite consensus disorder prediction 103 123 - -
Pumo3g00508 351 MobiDBLite consensus disorder prediction 1 54 - -
Pumo3g00508 351 MobiDBLite consensus disorder prediction 1 34 - -
Pumo3g00508 351 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
Pumo3g00508 351 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Pumo3g00508 351 CDD AP2 119 166 IPR001471 GO:0003700|GO:0006355
Pumo3g00508 351 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 238 - -
Pumo3g00508 351 SMART rav1_2 119 173 IPR001471 GO:0003700|GO:0006355
Pumo3g00508 351 ProSiteProfiles AP2/ERF domain profile. 119 181 IPR001471 GO:0003700|GO:0006355
Pumo3g00508 351 Pfam AP2 domain 119 165 IPR001471 GO:0003700|GO:0006355
Pumo3g00508 351 Gene3D AP2/ERF domain 118 177 IPR036955 GO:0003700|GO:0006355
Pumo3g00508 351 MobiDBLite consensus disorder prediction 213 238 - -
Pumo3g00508 351 SUPERFAMILY DNA-binding domain 119 166 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00508 Pumo-Chr3 7384402 7385457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00508 11 350 AP2-EREBP Transcription Factor Family AT1G68550 36.648 4.49e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo3g00508 AP2 3.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00508 - - gmx:102660769 513.842