Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00503 ATGAAGGTTTTTGTTAAGACTCTCAAGGGCACTCACTTCGAAATCGAAGTGAAGCCGCAAGACACGGTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTTCTGCACAGCAAATGCTAATTCATCAAGGGAAAGTTCTCAAGGATGCTACTACCTTGGAGGAGAATAAAGTAGCTGAAAATAGTTTCATTGTAATTATGCTATCAAAGAGTAAGAGCACATCTGGTGAAGGATCTACTACTTCAACTGCACCATCAATCAAGGCTCCACAGACAAGTACAGCTCCTGCTTCAACCCCTCCAGTGTCAGTAGCGCCTCAAGCTCTTGCTCCTGCTACAACTGGGGCACCGCCTGCATCTGTTACTGCACCTGTATCTTCACCTTCTCCAGATCCAGCCCCAGCTCCTGCTCTTGTATCTTCAGGAACTGCTGTGGAAGAGTCTGATATCTATGGGCAGGCTGCATCCAATCTGGTTGCTGGAAGCAACTTGGAGGGAACAATTCAGCAAATTCTTGATATGGGTGGAGGGAGCTGGGACAGGGATACTGTAGTCCGTGCTCTTCGAGCTGCCTACAACAACCCTGAGAGAGCGGTTGAATATTTGTATACAGGTATCCCCGAGCAAGCAGAAGCTCCACTTGTAGCCCAAGCGCCTGCAAGTGCTCAACCTGCAAATCCTGCTGCTGCTGCTGCTGCTCCACAAACAGCACAACCTGCTCCAGTTACCTCAACTGGACCTAACGCTAATCCTTTAGACCTTTTTCCCCAGGGTCTCCCCAATGTGGGTTCTGGTGCTGCTGGTGCTGCTGGTGCTGGCTCATTAGATTTTCTGCGCAACAGTCAACAATTCCAAGCCTTGCGAGCTATGGTACAGGCCAATCCACAAATATTGCAGCCTATGCTTCAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGAGACCATCAAGCTGACTTCCTCCGCCTGATAAATGAACCTGTGGAAGGTGGCGAAGGGAACATATTGGGGCAGCTGGCTTCTGGCATGCCACAAGCAGTAACTGTCACCCCTGAGGAGCGCCAAGCAATCGAACGTCTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTCGCTTGTAACAAAAATGAGGAATTGGCCGCCAACTACCTTTTAGATCACATGCATGAGTTCGAGGAACAATAG 1224 0.482 MKVFVKTLKGTHFEIEVKPQDTVSEVKKNIETVQGADVYPSAQQMLIHQGKVLKDATTLEENKVAENSFIVIMLSKSKSTSGEGSTTSTAPSIKAPQTSTAPASTPPVSVAPQALAPATTGAPPASVTAPVSSPSPDPAPAPALVSSGTAVEESDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVAQAPASAQPANPAAAAAAPQTAQPAPVTSTGPNANPLDLFPQGLPNVGSGAAGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNILGQLASGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFEEQ 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00503 407 SMART CBM 279 322 IPR006636 -
Pumo3g00503 407 SUPERFAMILY XPC-binding domain 278 343 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pumo3g00503 407 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Pumo3g00503 407 Pfam UBA/TS-N domain 362 397 IPR015940 -
Pumo3g00503 407 Pfam UBA/TS-N domain 173 208 IPR015940 -
Pumo3g00503 407 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 395 - -
Pumo3g00503 407 SMART ubq_7 1 75 IPR000626 GO:0005515
Pumo3g00503 407 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Pumo3g00503 407 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 359 400 IPR015940 -
Pumo3g00503 407 FunFam UV excision repair protein RAD23 1 80 - -
Pumo3g00503 407 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Pumo3g00503 407 FunFam UV excision repair protein RAD23 homolog 353 401 - -
Pumo3g00503 407 CDD Ubl_Rad23 1 74 - -
Pumo3g00503 407 NCBIfam UV excision repair protein Rad23 1 405 IPR004806 GO:0006289
Pumo3g00503 407 CDD UBA1_Rad23_plant 164 213 - -
Pumo3g00503 407 Pfam XPC-binding domain 281 336 IPR015360 GO:0003684|GO:0006289|GO:0043161
Pumo3g00503 407 Gene3D - 1 80 - -
Pumo3g00503 407 Gene3D - 163 213 - -
Pumo3g00503 407 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 168 211 IPR015940 -
Pumo3g00503 407 FunFam UV excision repair protein RAD23 homolog 163 213 - -
Pumo3g00503 407 SUPERFAMILY UBA-like 343 404 IPR009060 GO:0005515
Pumo3g00503 407 MobiDBLite consensus disorder prediction 232 255 - -
Pumo3g00503 407 FunFam UV excision repair protein RAD23 B 271 337 - -
Pumo3g00503 407 PRINTS DNA repair protein Rad23 signature 356 372 IPR004806 GO:0006289
Pumo3g00503 407 PRINTS DNA repair protein Rad23 signature 388 403 IPR004806 GO:0006289
Pumo3g00503 407 PRINTS DNA repair protein Rad23 signature 307 329 IPR004806 GO:0006289
Pumo3g00503 407 PRINTS DNA repair protein Rad23 signature 373 387 IPR004806 GO:0006289
Pumo3g00503 407 SUPERFAMILY UBA-like 167 220 IPR009060 GO:0005515
Pumo3g00503 407 MobiDBLite consensus disorder prediction 79 147 - -
Pumo3g00503 407 Gene3D - 354 401 - -
Pumo3g00503 407 Gene3D - 270 337 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pumo3g00503 407 MobiDBLite consensus disorder prediction 79 107 - -
Pumo3g00503 407 SMART uba_6 362 399 IPR015940 -
Pumo3g00503 407 SMART uba_6 170 210 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00503 Pumo-Chr3 7303214 7307450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00503 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 1.50e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00503 K10839 - gmx:100814162 595.89