Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00491 ATGCAAAGCTTCAACACAACCGAATCAGAATCAACCTCACCACTCTATGCTCATTCTCCCTTCTTTCACCGGGGAAATGAGACCAGCCGAAATCCAACGCGTTTCTCGGATCTTCAGCATTCTTTTCGACAACACGATGCCGTTGATTTAAGCTCAAGTTCTGTGTTTGGTGCAAAGTCGAGCAATGTGGCTGTTGTTGCAAGCAACTTGCAGTGTGGGACATTCAACACGAACCTTGGGTGTGCAGAGTTTGGTTCGACAGTTGCAGGGTGCGTCGAGACAGAGCGGCAACCCATGTTTCAGAGAGGAACCACTAACGCCACCCTGTCCATGGGGAACCAGCATGTTGAGAATTGGGCTGATGATAGCCAACACACTGAAGATACCTGCACAGATATTGACACCGATGATAGAAACCAATGTTTCTCAACCGTGTCTTGGTGTAATGGAGTTGGGGATGGGGCACTTGTAGTTGTGGATTCCCAGGATCAAAGTAAGACTAAGGTTAAAGCTGAAGACCAGAAGACTATACGTAGGCTAGCTCAAAATCGGGAGGCTGCGAGGAAGAGTCGGTTGAGGAAAAAGGCATATGTGCAACAATTGGAGAACAGTCGAGTTAGGCTTTCGCAATTAGAGCAAGAGCTTCAACGGGCACGTCAGCAGGGTGTTTTTATTGCAAGTGGAATCACGGGGGATCGTGCTCGTTCAGTTGTTGGAAATGGTGCATTAGCCTTTGACATGGACTATGCCCGTTGGGTTGATGAGCATCAACGGCTGATCAATGAGATAAGATCAGCTATAAATTCTCAAATGGGTGACACTGAACTGCACCTCCTTGTTGATGGAGTCATGGCACATTATGATGAATTATTTAGGTTGAAGAGCATAGGTGCAAAGGCTGATGTATTTCACATACTTTCTGGGATGTGGAAGACACCTGCAGAAAGATGCTTCATATGGCTGGGTGGATTTCGTTCATCTGAACTTCTCAAGATAGTTAGAAACCAGCTTGAACCGTTAACCGAACAGCAGTTGATGGGCATTTACAATTTGCAGCAGTCTTCCCAGCAGGCTGAGGATGCATTATCACAAGGCATGGAAGCATTGCAGCAGTCTCTTTCAGAGACACTTTCCTCCTCCTCCCTAGGGCCCTCTGGTTCTGGAAATGTTGCTGAGTACATGGGCCAAATGGCAATTGCATTGGGCAAGCTTGCCACACTAGAGAATTTCCTTCATCAGGCTGACCTCTTGAGGCAACAAACACTGCAACAGATGCGTCGAATTTTGACCACGTACCAAGCTGCTCGTGCTCTCCTTGTCATAAATGATTACGTTTCACGGCTTAGAGCTCTTAATTCATTGTGGTTAGCGTGCCCTAGAGAATACTAG 1389 0.4687 MQSFNTTESESTSPLYAHSPFFHRGNETSRNPTRFSDLQHSFRQHDAVDLSSSSVFGAKSSNVAVVASNLQCGTFNTNLGCAEFGSTVAGCVETERQPMFQRGTTNATLSMGNQHVENWADDSQHTEDTCTDIDTDDRNQCFSTVSWCNGVGDGALVVVDSQDQSKTKVKAEDQKTIRRLAQNREAARKSRLRKKAYVQQLENSRVRLSQLEQELQRARQQGVFIASGITGDRARSVVGNGALAFDMDYARWVDEHQRLINEIRSAINSQMGDTELHLLVDGVMAHYDELFRLKSIGAKADVFHILSGMWKTPAERCFIWLGGFRSSELLKIVRNQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMEALQQSLSETLSSSSLGPSGSGNVAEYMGQMAIALGKLATLENFLHQADLLRQQTLQQMRRILTTYQAARALLVINDYVSRLRALNSLWLACPREY 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00491 462 Pfam Seed dormancy control 260 334 IPR025422 GO:0006351|GO:0043565
Pumo3g00491 462 CDD bZIP_HBP1b-like 175 227 - -
Pumo3g00491 462 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 173 217 IPR004827 GO:0003700|GO:0006355
Pumo3g00491 462 ProSiteProfiles DOG1 domain profile. 242 458 IPR025422 GO:0006351|GO:0043565
Pumo3g00491 462 PANTHER TRANSCRIPTION FACTOR TGA9 102 461 - -
Pumo3g00491 462 Coils Coil 194 221 - -
Pumo3g00491 462 MobiDBLite consensus disorder prediction 1 34 - -
Pumo3g00491 462 SUPERFAMILY Leucine zipper domain 175 218 IPR046347 GO:0003700|GO:0006355
Pumo3g00491 462 Gene3D - 174 222 - -
Pumo3g00491 462 FunFam BZIP family transcription factor 174 223 - -
Pumo3g00491 462 SMART brlzneu 171 242 IPR004827 GO:0003700|GO:0006355
Pumo3g00491 462 MobiDBLite consensus disorder prediction 1 16 - -
Pumo3g00491 462 Pfam bZIP transcription factor 174 214 IPR004827 GO:0003700|GO:0006355
Pumo3g00491 462 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 178 193 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00491 Pumo-Chr3 7155395 7160769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00491 12 461 bZIP Transcription Factor Family AT1G68640 55.269 3.80e-160 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo3g00491 DOG1 2.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00491 K14431 - gmx:100775783 782.711