Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00484 ATGCTCCCCCTCAGCTGCATTCTTTTAATGTGCCTTCTAAGTTCCCTCTCACCCCCAATCAACGCTCTCCTCAACCTCACCGTACCCCACCCCGAATCCGTCGTCCACGAACTTCAACGGAAGGTGAATGCCTCACTATGGAGAAGGCAAATGCTGTCAAAGGACCAAGGCACGTGCCTGACCGGAAACCCCATCGACGACTGCTGGCGGTGCGACCCGAACTGGGCGGCGAACCGTGAGAAGCTGGCGGAGTGCGGCATCGGGTTCGGCAAGGACGCCCTGGGCGGCAAAGGCGGCCAGATCTACGTCGTAACGGACTCCTCGGACCGCGACCCGGCCAACCCCGTTCCCGGCACCCTCCGCCACGCCGTCATCCAAGACGAGCCTCTCTGGATCGTGTTCGCCGGCGACATGACCATAAACCTCAAACACGAGCTCATCTTCAACAGCTTCAAGACCGTGGACGGGCGCGGCGCCAACGTCCACGTCACCGGGCACGGCTGCATCACCCTCCAGTACGTCTCCAACGTCATCATCCACAACATCCACGTCCACCACTGCACGCCCTCCGGGAACACCAACATACGCGCCAGCCCAACGCACGTCGGGTGGAGAGGCAAATCCGATGGTGATGGGATTTCAATCTTCGGGTCCCGGAAGATCTGGATCGACCATTGCTCGCTCTCTTATTGTACTGACGGCTTGATCGATGCCATCATGGGGTCCACCGGGATTACTATTTCGAATAACCACTTCGCGCACCACGATGAGGTGATGCTCTTGGGACACGACGATAAGTACTCCCCGGATAGGGGCATGCAGGTTACCATTGCGTTTAATCACTTCGGTGAGGCTTTGGTGCAGCGCATGCCACGCTGCAGGCTCGGATATATCCACGTGGTTAATAATGATTTCACGCAGTGGCAGATGTATGCTATCGGCGGTAGCGCTAACCCCACCATCAACAGCCAGGGTAACCGTTACACCGCTCCCTCCAACGCTGATGCCAAAGAGGTTACGAAGCGCGTGGACACAGACGACAGAGAGTGGAGTGGTTGGAATTGGAGAACGGAAGGGGATATAATGGTAAATGGAGCCTTCTTTGTACCGTCGGGGACAGGGCTCAGTGCTCAGTACGCAGAGGCCACCAGTGTGCAAGCCAAATCCGCTGTGCAAATTGACCAGCTCACAATGTATTCCGGTGTCTTCGGTGATCCCAGGGATAATGGGGATTTATATCCCGGTTTCAACGGTGGTGGGACCGTGACTGGAGCCACCAGCAAAGGCAACACTGAGGGGTCCAGCAGTGACGATGGGGACTTCTTCGGGATGATATTCAGAGGTAGCAGCAGCCAAGCAGCGCCACCATCACCCTCTTCGTCCATTGTATTTGTTTCAACCTTTTTGTCTCTTTTAATTATTTTCATTTTGGACACTACCAACAACCATCCCATTCTATTATCATTACTATGA 1473 0.5547 MLPLSCILLMCLLSSLSPPINALLNLTVPHPESVVHELQRKVNASLWRRQMLSKDQGTCLTGNPIDDCWRCDPNWAANREKLAECGIGFGKDALGGKGGQIYVVTDSSDRDPANPVPGTLRHAVIQDEPLWIVFAGDMTINLKHELIFNSFKTVDGRGANVHVTGHGCITLQYVSNVIIHNIHVHHCTPSGNTNIRASPTHVGWRGKSDGDGISIFGSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNNHFAHHDEVMLLGHDDKYSPDRGMQVTIAFNHFGEALVQRMPRCRLGYIHVVNNDFTQWQMYAIGGSANPTINSQGNRYTAPSNADAKEVTKRVDTDDREWSGWNWRTEGDIMVNGAFFVPSGTGLSAQYAEATSVQAKSAVQIDQLTMYSGVFGDPRDNGDLYPGFNGGGTVTGATSKGNTEGSSSDDGDFFGMIFRGSSSQAAPPSPSSSIVFVSTFLSLLIIFILDTTNNHPILLSLL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00484 490 Gene3D - 62 404 IPR012334 -
Pumo3g00484 490 FunFam Pectate lyase 62 404 - -
Pumo3g00484 490 SMART amb_all 137 334 IPR002022 -
Pumo3g00484 490 Pfam Pectate lyase 145 326 IPR002022 -
Pumo3g00484 490 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Pumo3g00484 490 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Pumo3g00484 490 PRINTS Pollen allergen Amb family signature 109 134 IPR018082 -
Pumo3g00484 490 PRINTS Pollen allergen Amb family signature 85 102 IPR018082 -
Pumo3g00484 490 PRINTS Pollen allergen Amb family signature 209 230 IPR018082 -
Pumo3g00484 490 PRINTS Pollen allergen Amb family signature 353 377 IPR018082 -
Pumo3g00484 490 PRINTS Pollen allergen Amb family signature 382 405 IPR018082 -
Pumo3g00484 490 PRINTS Pollen allergen Amb family signature 145 161 IPR018082 -
Pumo3g00484 490 SUPERFAMILY Pectin lyase-like 63 390 IPR011050 -
Pumo3g00484 490 PANTHER PECTATE LYASE 18-RELATED 24 403 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00484 Pumo-Chr3 7030520 7035782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00484 1 479 Polysaccharide Lyase AT3G53190 63.340 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00484 K01728 - gmx:100808438 889.026