Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00478 ATGTTTCAGGAGAGCAGCGTGACGCGGTGGCCGACTCAGCCGGTTCAGCCGAGTCAGTGGACTCGCTACCACGACAAGCTCTTCGAGCGGGCTCTGCTGGTCGTGCCGGAGGACATGCCGGACCGCTGGGAGAAGATCGCCGACCAGGTTCCCGGCAAGTCGGCGGCGGAGGTTAGGGAACACTACGAGGCCCTCGTCCACGACGTGTTCGAGATCGACTCCGGCCGAGTCGAGGTCCCGAGTTACGTCGATGACTCGGTGGCGCCGCCGCCCAGTGGCGGTGCTGGAATTTCAACGTGGGACAACGCTAATCAGATCTCATTCGGGTCCAAGCCTAAGCAACAAGGCGACAACGAAAGGAAGAAAGGCACGCCTTGGACTGAAGAGGAACACAGGCTGTTTCTCATTGGGCTCAGTAAATTTGGGAAGGGAGATTGGAGAAGCATTTCAAGAAATGTTGTTGTGACAAGAACACCAACTCAAGTAGCTAGCCATGCCCAGAAATACTTTCTTCGCCAGAATTCAGTGAAGAAAGAGAGGAAAAGATCAAGCATCCATGACATAACCACAGTGGACAGTAACTCAGTACCTGTGCCAATTGATCAGAATTGGGTTCCTCCACCGGGTGGTTCAATGCAGCAGTATCCATCAAACAACTTGCATGATCAAATGGGTCGATTTGGGTATTCAAACTATGGCTTTGAAATGTAA 711 0.5302 MFQESSVTRWPTQPVQPSQWTRYHDKLFERALLVVPEDMPDRWEKIADQVPGKSAAEVREHYEALVHDVFEIDSGRVEVPSYVDDSVAPPPSGGAGISTWDNANQISFGSKPKQQGDNERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDSNSVPVPIDQNWVPPPGGSMQQYPSNNLHDQMGRFGYSNYGFEM 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00478 236 MobiDBLite consensus disorder prediction 97 113 - -
Pumo3g00478 236 CDD SANT 125 170 IPR001005 -
Pumo3g00478 236 ProSiteProfiles Myb-like domain profile. 12 66 IPR001005 -
Pumo3g00478 236 FunFam transcription factor MYB1R1 124 175 - -
Pumo3g00478 236 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Pumo3g00478 236 SUPERFAMILY Homeodomain-like 120 175 IPR009057 -
Pumo3g00478 236 MobiDBLite consensus disorder prediction 81 126 - -
Pumo3g00478 236 Gene3D - 15 79 - -
Pumo3g00478 236 Gene3D - 124 176 - -
Pumo3g00478 236 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 17 223 IPR043363 -
Pumo3g00478 236 ProSiteProfiles SANT domain profile. 121 174 IPR017884 -
Pumo3g00478 236 CDD SANT 20 66 IPR001005 -
Pumo3g00478 236 Pfam Myb-like DNA-binding domain 125 170 IPR001005 -
Pumo3g00478 236 NCBIfam myb-like DNA-binding domain, SHAQKYF class 121 173 IPR006447 GO:0003677
Pumo3g00478 236 SMART sant 122 172 IPR001005 -
Pumo3g00478 236 SMART sant 16 68 IPR001005 -
Pumo3g00478 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 118 174 IPR017930 -
Pumo3g00478 236 FunFam Transcription factor SRM1 12 79 - -
Pumo3g00478 236 ProSiteProfiles Myb-like domain profile. 118 170 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00478 Pumo-Chr3 6921283 6923274 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo3g00478 Myb_DNA-binding 4.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00478 - - gmx:547481 452.981