Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00457 ATGGCGGCATCGTCTTCCTCAGCATCGCTCTTTGGATTTGGAGAAGAGGATCAGAACCAGATGAAGCAACAGCATTCCTTGACACCATCTTCATCAACAACTCCAGCTGCACCACCACCCCAGAAGAAAAAGAGAAACCAACCTGGAACACCATATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACAGGGATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAGTATGCTGTTCAATCAGATTGGAAAGCCCATTCTAAGACTTGTGGCACCAGAGAATATAGATGTGACTGTGGCACCCTCTTCTCCAGGCGAGACAGTTTCATCACTCACAGGGCCTTCTGCGATGCACTGGCTCAAGAGAGTGCAAGACAGCCACCGAGCCTTAGTGGCGGGGGCGGCGGCATTGGCAGCCATCTATACGGAGGCGCCACCAACATGGCCTTAAACCTATCTCAGGTCGGTTCTCAGATCTCAACCATGCAAGACCCCAACGCCCAACCAACCGAACTCCTCCGCCTCGGCGCCACAGCCGGTCGAACCGGCCAGTTCGAGCACATCCTCGGTTCACCCTTCCGACCCTCAAACCAACAACCTTTCTTCATCTCCGAACCCAACCAAACCTACCACCCCGACCAGCTCCAAAACAAACCCTTCCAACAAGGTTTGATGCAATTGTCTGATCACCTTAACAACAACCACCACAACAATTCACCCTTTAACCTTCCCTTTCTCTCCAACAACACCGCCAACACAAGCAACGCTGCTTCGTTCTCTGAACACTTCAACAATGCCAATGGAGGAGGTAACAACAACAACAACGAGGGTACTAACTTCTTCACAACTTCAAGTGCACCTTCTCTCTTCAGCAACAACAATGCCAATGTGAATGCCAATGTCAATGCGTTATCTCACATGTCCGCAACTGCGCTGCTTCAGAAAGCTGCACAAATGGGTGCAACTTCGAGCAACAGCACCGCTTCGCTCTTGAAAAGCTTCGGAAGCGCGTCCTCTAGCAGCGGCTCTAAATCTGATCAACAGCACAGGCCACTGGTCAACGCTGCAAACTACGTCTTCGGAGGGAATCACGTTAACGAACAGAGTAACAGTAACCTCCAAGACCTCATGAACTCCTTCGCTGTTAGTGGAAACTCTTCCATTTTCGAAGGAGGGTTTGAAGCATATGATCATAATAATAATAGGGACCCAAAAGTGCACGCAATGAGTGGAAGTAGCAGCATTGGAGGGTCTGATAGGCTCACCCGCGATTTTCTGGGAGTTGGTCAGATAGTTAGAGGCATGAGTGGGAGTGGAGGGGTTGCGCAGAGAGAACAGCAACATGGCTTCAACTTGAGTTCTTTGGAGGCAGAAAGAAGTAATAATAATAATAATAGTAATAATGCTGCGCCGTCAGGGCAAGCTTTTGGAGGTGGTGGAGGGAATTTTCAGTGA 1692 0.4935 MAASSSSASLFGFGEEDQNQMKQQHSLTPSSSTTPAAPPPQKKKRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPSLSGGGGGIGSHLYGGATNMALNLSQVGSQISTMQDPNAQPTELLRLGATAGRTGQFEHILGSPFRPSNQQPFFISEPNQTYHPDQLQNKPFQQGLMQLSDHLNNNHHNNSPFNLPFLSNNTANTSNAASFSEHFNNANGGGNNNNNEGTNFFTTSSAPSLFSNNNANVNANVNALSHMSATALLQKAAQMGATSSNSTASLLKSFGSASSSSGSKSDQQHRPLVNAANYVFGGNHVNEQSNSNLQDLMNSFAVSGNSSIFEGGFEAYDHNNNRDPKVHAMSGSSSIGGSDRLTRDFLGVGQIVRGMSGSGGVAQREQQHGFNLSSLEAERSNNNNNSNNAAPSGQAFGGGGGNFQ 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00457 563 SMART c2h2final6 112 142 IPR013087 -
Pumo3g00457 563 SMART c2h2final6 71 93 IPR013087 -
Pumo3g00457 563 SMART c2h2final6 147 167 IPR013087 -
Pumo3g00457 563 MobiDBLite consensus disorder prediction 536 552 - -
Pumo3g00457 563 Gene3D Classic Zinc Finger 125 204 - -
Pumo3g00457 563 MobiDBLite consensus disorder prediction 1 32 - -
Pumo3g00457 563 FunFam protein indeterminate-domain 12-like 50 118 - -
Pumo3g00457 563 Gene3D Classic Zinc Finger 54 119 - -
Pumo3g00457 563 MobiDBLite consensus disorder prediction 536 563 - -
Pumo3g00457 563 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 529 IPR031140 -
Pumo3g00457 563 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Pumo3g00457 563 MobiDBLite consensus disorder prediction 1 55 - -
Pumo3g00457 563 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Pumo3g00457 563 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Pumo3g00457 563 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Pumo3g00457 563 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00457 Pumo-Chr3 6715794 6722920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00457 41 519 IDZ Gene Family AT2G02070 49.817 3.64e-138 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g00457 zf-C2H2_jaz 3.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00457 K25870 - gmx:100786121 854.358