Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00447 ATGGGTAGTTGTGGAAGAGAAGGAGCAGTGAGGCAATATATAAGATCGAAGGTTCCTCGTTTAAGGTGGACACCTGAGCTGCACCGTTGCTTTGTTCACGCTATTGATAGCCTTGGAGGTCATCATAAGGCTACTCCCAAGCTTGTTCTTCAGTTGATGGATGTTAAAGGGCTCACAATTTCACACGTCAAGAGCCATCTTCAGATGTACAGAAGCATGAGGGGTGACTTGGGCAGACAAGGTAGGACACCCTCCCAACATAGGAACCAATCTTTTGAGGAGCATGATGATGGGTGTGTTGATGAAGTGAATGATGTTGGTGTTGAGTACTCGTGTTCGAAACCCAAGGGAAGAGAATCTGATTCCTTCTTCGGCCACAGTAATCTCCCTCCAAAAAGAGCAAGAATCGAGACGAGGAGTTCGATCTCAGAGAGCCTGCAATGCAGCCAAAGATTATGTGATGCAGTTCCAAATCCGTACTGTTTTTATGATTATCTGCAGAAGCCCATGGCTGAGCAGCAGCACAAGAAGGGAATAAAGGAGTTCTGTGAAGCAGCAGCAGCAGCTTCAACATGGCAGACACAACCCCATTCCCCTCTGCTACCAGATTTTCCCAACCTCAGTTCATTCAAATCTCCTAACCAACAACTCCAGGTTACTAAATTAAATGAAGGAAAGAGCAGTTCACAGCCAATTAATGTAGTTGTGAACAGTGAGACAGCTCATGCAGAAGTTGAAGATAATGTTCATGTAGGAGGGTATGAATTGTCATTGTCGCTCACATTGCCAAATCCTTCACCTCAGAGAAGTAATGCTTCTTCAGGCAGTGAGATCAGTGAGGCAATCTCATCATGCCCTGGGTTTAGCAACTACAAGGACTGCTCTAGTTCATCCACTGTCAAAGAAACAATTAATTTGGACCTATCTTTAGCCCTATGTGGCAATTGA 948 0.4494 MGSCGREGAVRQYIRSKVPRLRWTPELHRCFVHAIDSLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGDLGRQGRTPSQHRNQSFEEHDDGCVDEVNDVGVEYSCSKPKGRESDSFFGHSNLPPKRARIETRSSISESLQCSQRLCDAVPNPYCFYDYLQKPMAEQQHKKGIKEFCEAAAAASTWQTQPHSPLLPDFPNLSSFKSPNQQLQVTKLNEGKSSSQPINVVVNSETAHAEVEDNVHVGGYELSLSLTLPNPSPQRSNASSGSEISEAISSCPGFSNYKDCSSSSTVKETINLDLSLALCGN 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00447 315 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Pumo3g00447 315 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
Pumo3g00447 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 7 116 IPR046955 GO:0003700
Pumo3g00447 315 FunFam Myb family transcription factor 17 75 - -
Pumo3g00447 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Pumo3g00447 315 Gene3D - 18 74 - -
Pumo3g00447 315 MobiDBLite consensus disorder prediction 76 96 - -
Pumo3g00447 315 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00447 Pumo-Chr3 6551053 6555432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00447 1 74 G2-like Transcription Factor Family AT1G14600 74.684 4.10e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo3g00447 Myb_DNA-binding 1.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00447 - - gmx:100787188 473.011