Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00441 ATGGATATCAGTTTTTGTTTCTTCTGCTTCTGGTCTGTTTGTTCTTCAATTTTGCTCTTGCTTTTCTTGCTTTTAGTCAAAGGAAGTAACCAAAGCCACTTTGCTTTTCTGAGCTCAAAGAGGAAGTTCCACTATCATCATCCAGGTGACATGAACATCATCATGCAAAACTTAGTAGAGAGACTAAGACCCCTCGTGGGTTTGAACGGATGGGACTATTGTATCTACTGGAAATTGAGTGAAGACCAAAGGTTTCTTGAGTGGTTGGGATGCTGTTGTGCTGGCACTGAAAGCAATCAAAATGCTGGGGAAGAACATCTTTTCTCTGTCTCTTCTGTGGGTTCATGCAGGGATACCACTTATCCACACTCCAGAACAAAGCCCTGTGATCTTCTTTCCCAACTTTCCACTTCCATACCCATAGATAATTCTGGGATTCATGCACAGACCCTATTAACAAACCAACCCAACTGGGTGAACTATTCCAATAGCATGGATCCTAACATTTTGGAAGAAACAATTGGGACCCAGGTTTTGATTTCAGTGCCAGGTGGACTAGTTGAGCTGTTTGTAACAAAACAAGTGCCTGAAGATCATCAAGTAATAGATTTTGTCACAACCCTGTGCATTGAAGCGGTGAACCACTCAATGAGCTTCAACATTGACGAGAATTCAATGAGCAACAAGCAATCAGACCCACTTCTAGGCGACGAAAACGAAGGCAACAACAACAGGAACAATCACTTCCACCCTTCAGAACATGTCATCACTATGGACCACCGCATTGGTCTGTGCAATTCTCCACCACTGAACTTCATGCAGCAGTTCAACTACAACCAGCAGCAGCACAACAGAATGAAGAGCGATGCCTTCTCTGAAGAATACCAAGGCAATTCCTTCCTTCACGACAAGCAAACCAATAACCCAGAAGAGGAGCATGACACGTATCAGAAAAGCCTCATGACAACAGATTCACAATTCGTGGAGCCTTTGGAGGCAAAAGAGAAGCAAGAGGCCGAGGACAAGGACTTGCTGAAACACGTTGTTGGTAGATCAGATTCAATGTCAGATTGCAGTGACCAGAACGAAGAAGAGGAAGATGGAAAGTATAGGAGGAGGAATGGGAAGGGGAACCAGTCCAAGAACCTTGTGGCTGAGAGGAAGAGAAGGAAGAAGCTCAATGATAGGTTATATAACCTTCGTTCTTTGGTTCCGAGGATCTCTAAGCTGGATAGGGCATCCATTCTTGGAGATGCCATTGAGTATGTTAAGGATTTGCAGAAGCAAGTGAAGGAGCTCCAAGATGAGCTTGAGGAGAATGCAGACACTGAAAGCAACTGCATCAATGGGAATAATAATAATCAATATGTGGGTGTAGGTGAACTTGCTGGGCCAAACACTGAACATGGTAAGGCCCAAACTGGGTTGCATGTGGGAACATCAGGGAATGGCTATGTCTCCAAACAAAAGCAGGAAGATGCTAGTGTCATTGACAAGCAGACCCAGCAGATGGAGCCACAAGTGGAAGTGGCTCTCATAGATGGGAATGAGTATTTTGTGAAGGTGTTCTGTGAGCACAGACCCGGTGGGTTTGTGAAACTGATGGAGGCGTTGAACACTATCGGCATGGATATAGTGCATGCCACGGTAACCAGCCACAAGGGCCTCGTGTCAAATGTTTTTAAAGTGGAAAAAAAGGACAGTGAAACGGTTGAGGCTGAAGATGTAAGAGACTCACTGCTAGAGCTTACGCGGAACCGTTATAGACGGTGGACTCATGAGATGACAGAAACGTCGGAAAATGGTGTGGCCAGGGATCAACATCAACTCCACAACCACCAGATAGGTGTCTACCCGCACCAGTTTCATACTTAA 1875 0.4496 MDISFCFFCFWSVCSSILLLLFLLLVKGSNQSHFAFLSSKRKFHYHHPGDMNIIMQNLVERLRPLVGLNGWDYCIYWKLSEDQRFLEWLGCCCAGTESNQNAGEEHLFSVSSVGSCRDTTYPHSRTKPCDLLSQLSTSIPIDNSGIHAQTLLTNQPNWVNYSNSMDPNILEETIGTQVLISVPGGLVELFVTKQVPEDHQVIDFVTTLCIEAVNHSMSFNIDENSMSNKQSDPLLGDENEGNNNRNNHFHPSEHVITMDHRIGLCNSPPLNFMQQFNYNQQQHNRMKSDAFSEEYQGNSFLHDKQTNNPEEEHDTYQKSLMTTDSQFVEPLEAKEKQEAEDKDLLKHVVGRSDSMSDCSDQNEEEEDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEENADTESNCINGNNNNQYVGVGELAGPNTEHGKAQTGLHVGTSGNGYVSKQKQEDASVIDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFVKLMEALNTIGMDIVHATVTSHKGLVSNVFKVEKKDSETVEAEDVRDSLLELTRNRYRRWTHEMTETSENGVARDQHQLHNHQIGVYPHQFHT 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00441 624 MobiDBLite consensus disorder prediction 347 388 - -
Pumo3g00441 624 MobiDBLite consensus disorder prediction 222 248 - -
Pumo3g00441 624 Gene3D - 365 442 IPR036638 GO:0046983
Pumo3g00441 624 SUPERFAMILY ACT-like 517 586 IPR045865 -
Pumo3g00441 624 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 59 207 IPR025610 -
Pumo3g00441 624 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 274 585 - -
Pumo3g00441 624 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 380 439 IPR036638 GO:0046983
Pumo3g00441 624 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 377 426 IPR011598 GO:0046983
Pumo3g00441 624 Pfam Helix-loop-helix DNA-binding domain 384 427 IPR011598 GO:0046983
Pumo3g00441 624 SMART finulus 383 432 IPR011598 GO:0046983
Pumo3g00441 624 CDD ACT_UUR-ACR-like 520 583 - -
Pumo3g00441 624 ProSiteProfiles ACT domain profile. 519 591 IPR002912 -
Pumo3g00441 624 Coils Coil 416 446 - -
Pumo3g00441 624 CDD bHLH_AtAMS_like 380 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00441 Pumo-Chr3 6437422 6440579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00441 55 598 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 48.000 2.71e-149 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo3g00441 bHLH-MYC_N 1.1e-19 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00441 - - gmx:100798282 939.102