Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo3g00438 | ATGGATTTTGACGAGTATGAGTATTTAGAGAAAACAGTTGAAAATCCTGAAGTTAAGAAGGAGAAGCAAAGGGTTAATGGTGGGGATAAAAGTGTGAAATCCGAAGAGAGAGGGCATAATGGGAATTCAAAGCATAAGGATGATGGTGATATTGATCTCCATTCCAAGCATTCAAAATCTGGAGACGATTCTCGTGATCGCGAGAGGCAGAGAGAAAGAGGCTCATTTCGTCATGGTACAAAGTCCAGGGACGGAGACAAGGAGAAGGATCAGCACAGAAGCTCTGGGGGCAGTAGGGATAGGAAGAGGGATAGGGACAGAGACCATGAGGACAAGGATAGGAAGAGAGACAAGGACAGAGACCATGAGGACAAGGATAGAAAGAGAGATAGGGAGAGAGACAGAGATCGCGATCGTGACCAAGAAAGGGACAGAAGGGACCGTGGGACTGAGGGTGAGCGGGAAAGGGAAAGGCGAAGCGGAAGTAGATCTGATAGGCATCGAACTGATCTCGATGACAAAGACAGAGAGACAAGTCGTGACAGGGACTATAGAGATAGAGAAAGAAGCCGGGATAAGGATTACAGAGACAGAGAAAGGGTGAGGGAATCAAGGGAACAGGATAGAGAAAACAGACGGCATAAAGAGAAAAAGGAAGAAGCAACAGAACCTGAGGCTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGATGTATATGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAGGGTGTTGGGTATATTGAGTTTTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCAGGCCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCGGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTAATGGACTCACTGGACTTGTAGGCCCTTATTCTGGGGGAGCAAGAAAGCTGTATGTTGGCAATCTGCATATCAGTATTACTGAAGCTGATATTCGTGGGGTGTTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTTGATGAAACTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAGGATGCAAGAAATGCTCAGAGCTTGAATGGTCAATTAGAGATCGGTGGTAGGACAATCAAGGTATCGGCTGTTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGATGAAGGAGGTGGCTTGTCCCTGAATGCATGTTCTCGAGCATTACTCATGCAGAAGTTGGATCGTAGTGGCACTGCATCAAGCATGGTTGGTTCCGTCGGTAATTCTGTTGTCAACAACACAGGTCTTAATCTACCAGCAACAGGAAACATACCTGCAGCTGCGTCTGTGGGTTCTTCCCTTTCTTCTGTTCCTGCAGTAGCTGGATTGGCAGGTGGAGGTCCCCAAATTCCCACGGCTACAATTCCTTCTATTGATACAATCGGTGTTCCAAGTGAATGCTTAATGTTAAAGAATATGTTTGATCCCAAAGATGAGACTGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGGACATTAAAACACATATATGTTGATAAGAAGAGTGCTGGTTTTGTCTACTTACGATTTGAAGATACCCAATCTGCAATAAGTGCACAGCGGGCCTTGCACGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTCATGGTTCCCCAATCATATGAGGAAAAATTCCCAGATAGCAGATAA | 1854 | 0.4488 | MDFDEYEYLEKTVENPEVKKEKQRVNGGDKSVKSEERGHNGNSKHKDDGDIDLHSKHSKSGDDSRDRERQRERGSFRHGTKSRDGDKEKDQHRSSGGSRDRKRDRDRDHEDKDRKRDKDRDHEDKDRKRDRERDRDRDRDQERDRRDRGTEGERERERRSGSRSDRHRTDLDDKDRETSRDRDYRDRERSRDKDYRDRERVRESREQDRENRRHKEKKEEATEPEADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVANGLTGLVGPYSGGARKLYVGNLHISITEADIRGVFEAFGQVELVQLPLDETGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMQEVGGNTGDFDDDEGGGLSLNACSRALLMQKLDRSGTASSMVGSVGNSVVNNTGLNLPATGNIPAAASVGSSLSSVPAVAGLAGGGPQIPTATIPSIDTIGVPSECLMLKNMFDPKDETEPDFDLDIKEDVEAECSKFGTLKHIYVDKKSAGFVYLRFEDTQSAISAQRALHGRWFAGKMITASFMVPQSYEEKFPDSR | 617 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo3g00438 | 617 | CDD | RRM1_RBM39_like | 234 | 306 | - | - | |
Pumo3g00438 | 617 | Gene3D | - | 162 | 318 | IPR012677 | - | |
Pumo3g00438 | 617 | FunFam | Splicing factor CC1-like | 163 | 318 | - | - | |
Pumo3g00438 | 617 | Gene3D | - | 518 | 617 | IPR012677 | - | |
Pumo3g00438 | 617 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 523 | 606 | IPR000504 | GO:0003723 | |
Pumo3g00438 | 617 | FunFam | Splicing factor, CC1-like protein | 518 | 617 | - | - | |
Pumo3g00438 | 617 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 243 | 302 | IPR000504 | GO:0003723 | |
Pumo3g00438 | 617 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 547 | 599 | IPR000504 | GO:0003723 | |
Pumo3g00438 | 617 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 339 | 408 | IPR000504 | GO:0003723 | |
Pumo3g00438 | 617 | CDD | RRM3_RBM39_like | 522 | 604 | - | - | |
Pumo3g00438 | 617 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 337 | 414 | IPR000504 | GO:0003723 | |
Pumo3g00438 | 617 | SMART | rrm1_1 | 524 | 602 | IPR000504 | GO:0003723 | |
Pumo3g00438 | 617 | SMART | rrm1_1 | 234 | 306 | IPR000504 | GO:0003723 | |
Pumo3g00438 | 617 | SMART | rrm1_1 | 338 | 410 | IPR000504 | GO:0003723 | |
Pumo3g00438 | 617 | SUPERFAMILY | RNA-binding domain, RBD | 337 | 610 | IPR035979 | GO:0003676 | |
Pumo3g00438 | 617 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 1 | 616 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
Pumo3g00438 | 617 | FunFam | CC1-like, splicing factor | 332 | 440 | - | - | |
Pumo3g00438 | 617 | SUPERFAMILY | RNA-binding domain, RBD | 226 | 325 | IPR035979 | GO:0003676 | |
Pumo3g00438 | 617 | Gene3D | - | 332 | 438 | IPR012677 | - | |
Pumo3g00438 | 617 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 428 | 541 | IPR029123 | - | |
Pumo3g00438 | 617 | NCBIfam | splicing factor, CC1-like family | 124 | 615 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
Pumo3g00438 | 617 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 233 | 310 | IPR000504 | GO:0003723 | |
Pumo3g00438 | 617 | MobiDBLite | consensus disorder prediction | 1 | 232 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo3g00438 | Pumo-Chr3 | 6324762 | 6334770 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo3g00438 | 234 | 400 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 28.402 | 6.28e-13 | 69.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo3g00438 | K13091 | - | gmx:100789839 | 768.074 |