Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00438 ATGGATTTTGACGAGTATGAGTATTTAGAGAAAACAGTTGAAAATCCTGAAGTTAAGAAGGAGAAGCAAAGGGTTAATGGTGGGGATAAAAGTGTGAAATCCGAAGAGAGAGGGCATAATGGGAATTCAAAGCATAAGGATGATGGTGATATTGATCTCCATTCCAAGCATTCAAAATCTGGAGACGATTCTCGTGATCGCGAGAGGCAGAGAGAAAGAGGCTCATTTCGTCATGGTACAAAGTCCAGGGACGGAGACAAGGAGAAGGATCAGCACAGAAGCTCTGGGGGCAGTAGGGATAGGAAGAGGGATAGGGACAGAGACCATGAGGACAAGGATAGGAAGAGAGACAAGGACAGAGACCATGAGGACAAGGATAGAAAGAGAGATAGGGAGAGAGACAGAGATCGCGATCGTGACCAAGAAAGGGACAGAAGGGACCGTGGGACTGAGGGTGAGCGGGAAAGGGAAAGGCGAAGCGGAAGTAGATCTGATAGGCATCGAACTGATCTCGATGACAAAGACAGAGAGACAAGTCGTGACAGGGACTATAGAGATAGAGAAAGAAGCCGGGATAAGGATTACAGAGACAGAGAAAGGGTGAGGGAATCAAGGGAACAGGATAGAGAAAACAGACGGCATAAAGAGAAAAAGGAAGAAGCAACAGAACCTGAGGCTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGATGTATATGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAGGGTGTTGGGTATATTGAGTTTTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCAGGCCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCGGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTAATGGACTCACTGGACTTGTAGGCCCTTATTCTGGGGGAGCAAGAAAGCTGTATGTTGGCAATCTGCATATCAGTATTACTGAAGCTGATATTCGTGGGGTGTTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTTGATGAAACTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAGGATGCAAGAAATGCTCAGAGCTTGAATGGTCAATTAGAGATCGGTGGTAGGACAATCAAGGTATCGGCTGTTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGATGAAGGAGGTGGCTTGTCCCTGAATGCATGTTCTCGAGCATTACTCATGCAGAAGTTGGATCGTAGTGGCACTGCATCAAGCATGGTTGGTTCCGTCGGTAATTCTGTTGTCAACAACACAGGTCTTAATCTACCAGCAACAGGAAACATACCTGCAGCTGCGTCTGTGGGTTCTTCCCTTTCTTCTGTTCCTGCAGTAGCTGGATTGGCAGGTGGAGGTCCCCAAATTCCCACGGCTACAATTCCTTCTATTGATACAATCGGTGTTCCAAGTGAATGCTTAATGTTAAAGAATATGTTTGATCCCAAAGATGAGACTGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGGACATTAAAACACATATATGTTGATAAGAAGAGTGCTGGTTTTGTCTACTTACGATTTGAAGATACCCAATCTGCAATAAGTGCACAGCGGGCCTTGCACGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTCATGGTTCCCCAATCATATGAGGAAAAATTCCCAGATAGCAGATAA 1854 0.4488 MDFDEYEYLEKTVENPEVKKEKQRVNGGDKSVKSEERGHNGNSKHKDDGDIDLHSKHSKSGDDSRDRERQRERGSFRHGTKSRDGDKEKDQHRSSGGSRDRKRDRDRDHEDKDRKRDKDRDHEDKDRKRDRERDRDRDRDQERDRRDRGTEGERERERRSGSRSDRHRTDLDDKDRETSRDRDYRDRERSRDKDYRDRERVRESREQDRENRRHKEKKEEATEPEADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVANGLTGLVGPYSGGARKLYVGNLHISITEADIRGVFEAFGQVELVQLPLDETGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMQEVGGNTGDFDDDEGGGLSLNACSRALLMQKLDRSGTASSMVGSVGNSVVNNTGLNLPATGNIPAAASVGSSLSSVPAVAGLAGGGPQIPTATIPSIDTIGVPSECLMLKNMFDPKDETEPDFDLDIKEDVEAECSKFGTLKHIYVDKKSAGFVYLRFEDTQSAISAQRALHGRWFAGKMITASFMVPQSYEEKFPDSR 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00438 617 CDD RRM1_RBM39_like 234 306 - -
Pumo3g00438 617 Gene3D - 162 318 IPR012677 -
Pumo3g00438 617 FunFam Splicing factor CC1-like 163 318 - -
Pumo3g00438 617 Gene3D - 518 617 IPR012677 -
Pumo3g00438 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 523 606 IPR000504 GO:0003723
Pumo3g00438 617 FunFam Splicing factor, CC1-like protein 518 617 - -
Pumo3g00438 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 243 302 IPR000504 GO:0003723
Pumo3g00438 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 547 599 IPR000504 GO:0003723
Pumo3g00438 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 339 408 IPR000504 GO:0003723
Pumo3g00438 617 CDD RRM3_RBM39_like 522 604 - -
Pumo3g00438 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 414 IPR000504 GO:0003723
Pumo3g00438 617 SMART rrm1_1 524 602 IPR000504 GO:0003723
Pumo3g00438 617 SMART rrm1_1 234 306 IPR000504 GO:0003723
Pumo3g00438 617 SMART rrm1_1 338 410 IPR000504 GO:0003723
Pumo3g00438 617 SUPERFAMILY RNA-binding domain, RBD 337 610 IPR035979 GO:0003676
Pumo3g00438 617 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 616 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pumo3g00438 617 FunFam CC1-like, splicing factor 332 440 - -
Pumo3g00438 617 SUPERFAMILY RNA-binding domain, RBD 226 325 IPR035979 GO:0003676
Pumo3g00438 617 Gene3D - 332 438 IPR012677 -
Pumo3g00438 617 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 428 541 IPR029123 -
Pumo3g00438 617 NCBIfam splicing factor, CC1-like family 124 615 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pumo3g00438 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 310 IPR000504 GO:0003723
Pumo3g00438 617 MobiDBLite consensus disorder prediction 1 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00438 Pumo-Chr3 6324762 6334770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00438 234 400 Eukaryotic Initiation Factors Gene Family AT4G34110 28.402 6.28e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00438 K13091 - gmx:100789839 768.074