Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00432 ATGGGTGTGGCTGAGCAGATTCCCGATATGGAGGAGGGTACCTTGGAGATTGGAATGGAATACAGAACTGTATCTGGAGTTGCTGGACCATTGGTCATTCTTGACAAAGTTAAGGGACCCAAATTTCAAGAGATTGTTAATATTCGTTTAGGAGATGGAACTACTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAGGCTGTTGTTCAGGTATTTGAAGGTACATCTGGGATCGACAATAAATTTACAACTGTGCAATTTACTGGAGAGGTGTTAAAAACTCCTGTCTCACTGGACATGCTTGGACGCATATTTAATGGTTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGGAAGTTCCATCAATCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAAACAGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTTTATTCTCAGCAGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGTCGTCAGGCTGGCTTAGTCAAGCGACTAGAGAAAACTGATAACCTTCTTGAGGGTGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGATCAATGGAGAGAGTGACTCTTTTCCTTAATTTGGCAAATGATCCTACAATTGAGCGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCACGTTCTTGTGATACTCACAGACATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTGCCAGGAAGACGTGGTTATCCTGGATATATGTATACAGATCTTGCAACAATTTATGAACGTGCTGGAAGAATTGAGGGGCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAGCAGATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAGAGTGCTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAGGTCTCTGATCTTGTTTTGTTCATCACAGAGTTAATTTTCTGTTCGCAGACTATCTCATTCATGTTATTTTTTTTCCAGCTCTATGCAAATTATGCTATCGGAAAGGATGTCCAGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTACCCAGGGAGCTTATGACACCCGCAATATATTCCAGTCACTAGATCTTGCATGGACTTTACTCCGGATTTTCCCCCGTGAACTTCTTCATCGTATACCAGCCAAGACTCTTGACCAGTTTTACAGCCGAGATGCTGGAGTCATTGATGATATGATGATACTTCTCTGGCTGGCTGGCTGGCTATTTGGAATGATCCTCGTGGTCAGCTTTATTCCCTGCTTTTGGCTGGCTCAATGA 1644 0.427 MGVAEQIPDMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEGGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQVSDLVLFITELIFCSQTISFMLFFFQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLEKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDAGVIDDMMILLWLAGWLFGMILVVSFIPCFWLAQ 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00432 547 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 7 513 IPR022879 -
Pumo3g00432 547 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Pumo3g00432 547 ProSitePatterns ATP synthase alpha and beta subunits signature. 370 379 IPR020003 GO:0005524
Pumo3g00432 547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 385 IPR027417 -
Pumo3g00432 547 Hamap V-type ATP synthase beta chain [atpB]. 18 514 IPR022879 -
Pumo3g00432 547 PIRSF V-ATPsynth_beta/V-ATPase_B 11 406 IPR022879 -
Pumo3g00432 547 PIRSF V-ATPsynth_beta/V-ATPase_B 422 519 IPR022879 -
Pumo3g00432 547 Gene3D - 423 516 - -
Pumo3g00432 547 Gene3D - 29 413 - -
Pumo3g00432 547 CDD ATP-synt_V_A-type_beta_C 389 509 - -
Pumo3g00432 547 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 379 IPR000194 GO:0005524
Pumo3g00432 547 CDD V_A-ATPase_B 92 387 - -
Pumo3g00432 547 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00432 Pumo-Chr3 6229677 6236553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00432 9 514 Primary Pumps ATPases(2) AT1G20260 91.897 0.0 938
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00432 K02147 - gmx:100814088 935.636