Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00425 ATGAGTGATTATGAAAAGTTGACACATGATGTACTATCATATGCTCAAGGCCATCCCTTGGCAATTGCAGTAACTGGCACATCTTTATTTGGTCGAAATGTCTCGCAATGGATAAGTGTATTGGCTAGGCTAAGAGATAATAAAATTAAAAATATTATGGATGAGTTGCGAATAAGTTTCAATGAGCTGGATGACATAGATAAGGAAATATTTCTAGATATTGCTTGCTTGTTCAATGGTTATAAGGAGCTATGTGTGAAGGAAGTTCTAGATTTTAATGGATTTCATCCTGAATATGGCTTAGAAGTTCTCATTGATAAATCACTCATAACCATTAAATATGGGATAATTGTTGTGCATAGCTTGTTGAAGGACTTGGGCAGGTGTATTGTTCGAGAAAAGTCACCTATGGAGCCTATAAAGTGGAGTAGGTTGTGGGATTACCAAGATCTCCACAAAGTTATGTTAGACAATCTGGTAATTGAAAATCTTGAAGCCATAGTTGTTCTACGTAAGTCACCGGAGATTTATGAAACAATAATGAGGGCAGATACCTTATCACAAAAGAATCACCTTAAGTTGCTCCAACTTGAGATGGTGAACTTTTCAGGAAGTCTCAATTATCTTTCAAATGAATTAGGATATCTTACCTAG 654 0.3578 MSDYEKLTHDVLSYAQGHPLAIAVTGTSLFGRNVSQWISVLARLRDNKIKNIMDELRISFNELDDIDKEIFLDIACLFNGYKELCVKEVLDFNGFHPEYGLEVLIDKSLITIKYGIIVVHSLLKDLGRCIVREKSPMEPIKWSRLWDYQDLHKVMLDNLVIENLEAIVVLRKSPEIYETIMRADTLSQKNHLKLLQLEMVNFSGSLNYLSNELGYLT 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00425 217 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 216 IPR044974 GO:0006952
Pumo3g00425 217 SUPERFAMILY "Winged helix" DNA-binding domain 51 154 IPR036390 -
Pumo3g00425 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 74 IPR027417 -
Pumo3g00425 217 Gene3D - 1 64 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00425 Pumo-Chr3 6146968 6147721 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00425 6 181 WRKY Transcription Factor Family AT5G45050 31.285 1.43e-23 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00425 - - gmx:100814717 277.33