Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00424 ATGCTTTGTTTGTATCCAGAGACACTAGTCCTTGCTTTGAACCTTCACAGTAATTCTAATACTCATTCTTCTCAACAGATTTTGCTTTCACTAATGGCTTCTAATGCAATCATCCAATACACCTCTTGTTCATCTCACGTGATAAAGACATATGACATGTTTGTGAGCTTCCGTGGTGAAGACACACGCAACAATTTCACTGGTTTTCTCCTTGAAGCTCTCTGTAGAAAAGGCATTGATGCCTTCAAAGATGATGAAGATATCAAGAAAGGCGAATACATAGCACCTGAGCTGCTGCAAGCAATCGAAGGGTCACACATTTTCATTGTGGTCTTCTCAAAGAACTATGCTTCCTCTACTTGGTGCTTGCGTGAACTGGCTGAGATATGCAACTGCATTGAAACATCGCCCAGACAGGTGCGAAAACATAGTGGATGTTATGAGAAAGCATTTGTGGAACATGAAGAAAGATTCAAAGAAGATAGAGAGAAGATGGAGGAAGTGCAGAGATGGAGAGAAGTGCTGACACGAGTGGCCAATCTCTCTGGTTGGGATATTCGAAATAAGCCACAATATGCAGAAATTGAAGTAATTGTTAAAAATATACTAAATATATTGGGTCCCAAAATTTCATGTCTTCCAAATGATGATCTACTTCTATGTTTGGGGTCAGTTAATGATGTTCGAGTTGTTGGAATTTGTGGGATGGGTGGAATAGGAAAGACGACTCTTGCCCATGCTTTTTATGAAAGAATCTCTCATCGATATGATTTTCATTGTTTTATTGACGATGTAAGCAAAATTTATCGAGATTCTAGTGCGTTAGGTGTCCAAAAGCAATTACTTTCTCAGTCTCTAAATGAGAAAAATCTAGAGATTTTCAATGTTTCTGAGGGAACATGTTTGGTATGGACTAGGCTACGAAATGCAAGGGCACTTATACTTCTTGATAATGTCGATCAAATTGAACAACTAGAGATGTTTATAGGGAATAGACAGACTCTGTTACGTGGATGCCTTGGTGGAGGGAGCCGAATCATCGTAATTTCTAGGGATGAACATATATTAAGGACACTTGGAGTGGATGATGTTTACCAAGTCTAG 1104 0.3913 MLCLYPETLVLALNLHSNSNTHSSQQILLSLMASNAIIQYTSCSSHVIKTYDMFVSFRGEDTRNNFTGFLLEALCRKGIDAFKDDEDIKKGEYIAPELLQAIEGSHIFIVVFSKNYASSTWCLRELAEICNCIETSPRQVRKHSGCYEKAFVEHEERFKEDREKMEEVQRWREVLTRVANLSGWDIRNKPQYAEIEVIVKNILNILGPKISCLPNDDLLLCLGSVNDVRVVGICGMGGIGKTTLAHAFYERISHRYDFHCFIDDVSKIYRDSSALGVQKQLLSQSLNEKNLEIFNVSEGTCLVWTRLRNARALILLDNVDQIEQLEMFIGNRQTLLRGCLGGGSRIIVISRDEHILRTLGVDDVYQV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00424 367 Pfam TIR domain 51 187 IPR000157 GO:0007165
Pumo3g00424 367 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51 358 IPR044974 GO:0006952
Pumo3g00424 367 ProSiteProfiles TIR domain profile. 49 206 IPR000157 GO:0007165
Pumo3g00424 367 Pfam NB-ARC domain 226 356 IPR002182 GO:0043531
Pumo3g00424 367 Gene3D - 215 362 IPR027417 -
Pumo3g00424 367 PRINTS Disease resistance protein signature 230 245 - -
Pumo3g00424 367 PRINTS Disease resistance protein signature 306 320 - -
Pumo3g00424 367 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 365 IPR027417 -
Pumo3g00424 367 SMART till_3 50 181 IPR000157 GO:0007165
Pumo3g00424 367 SUPERFAMILY Toll/Interleukin receptor TIR domain 46 184 IPR035897 -
Pumo3g00424 367 Gene3D - 48 209 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00424 Pumo-Chr3 6145434 6146904 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00424 49 367 WRKY Transcription Factor Family AT4G12020 25.000 1.02e-21 95.5