Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00419 ATGGCTTCTAACACCATCATCCAATACACCTCTTCTTCATCTCACGTGAAGAGGACATATGATATCTTTGTGAGCTTCCGCGGTGAAGACACACGCAACAATTTCACTGGTTTTCTCCTTGAAGCTTTTCGTAGAAAAGGCATTGATGCCTTCGAAGATGATAAAGATATCAAGAAAAGTGAATCCATAGCACTTGAGCTACTGCAAGCCATTGAAGGGTCTCGCATTTTCATTGTGGTCTTCTCAAAGAACTATGCTTCCTCTACTTGGTGCTTGTGTGAACTAGCAGAGATCTGCAACTGCATTGAAACATCGCCAAGTCATGTTCTGCCTATTTTTTATGATGTTGATTCTTCAGAGGTGCAAAAACAAAGTGGATGTTATGAGAAAGCATTTACAGAATACGAAGAAAGATTCAGAGAAGATGAAGAGAAGATGGAGGAAGTGCAGAGATGGAGAGAAGCTCTCACACGAGTGGCCAATTTGTCTGGTTGGGATATCGGAAATAAGCCACAATATGCAGAAGTTGAAGTAATTGTTCAAAACATACGAAACATATTGGGTCCCAAAATTTCATGTCTTCCAAATGAGGATCTAGTAGGGATAGAGTCTCGTGTTGAAGAATTAGCAAAGCTTCTATGTTTGGGATCAATTAATGATGTTCGAGTTGTTGGAATTTGTGGGATGGGTGGAATAGGAAAGATGACTCATGCCGTGCTTTATATGAAAGAATCTCTCATCGATATGATTTTCATTGTTTTATTGATGATGCTACGAAATGCAAGGGCACTTATACTTCTTGATAATGTTGATCAAATTGAACAACTAGAGATGTTTATAGGGAATAGACAGACTTTGTTACTTGGATGCCTAGGTGGAAGGAGTCGAATCATTGTAATTTCTAGGGATGAACATATATTAAGGACACATGGAATGGATGATGTTTACCAAGTTCAGCCATTGAATGAGGAAAATGCTGTCCAGTTATTTTGTAGAAATGCTTTCAAAGGTAATTATATTATGAGCGATTATGAAAAGATGACACGTGATGTATTATCACATGCTCAAGGCCATCCTTTAGCAATTGCAGTAATTGGCTCATCTTTATTTGGTCGAAATGTCTCACAGTGGAGAAGTGCATTGGCTAGGGTAAGAGATAATAAAAGTAAAAATATTATGGATGTGATGCGAATAAGTTTCTATGAGCTGGATGACGTAGATAAGGAAATATTTCTAGATATTGCTTGCTTCTTCAGTGGTTATGAGGAGCCATATGTGAAGGAAGTTCTAGATTTTTGTGGAATTCATCCTGAATATGGATTACAAGTTCTCGTTGATAAATCACTCATAACCGTTAAATATGGGATGATTGTTATGCATAGCATGTTAAAGGACTTGGGCAGGTGTATTGTTCGAGAAAAATCACCTAAGGAGCCCATGAAGTGGAGTAGGTTGTGGGATTACCAAGATCTCCACAAAGTTATCTTAGACAATCTGGTAACTGAAAATCTTGAAGCCATAGTTGTTCTACGTAAGTCACCGGTGATTTATGAAACAATAATGAGGGCAGATGCTCTATCAAAAATGAATCACCTTAAGTTGCTCCAACTTGAGATGGTGAACTTTTTAGGAAGTCTCAATTATCTTTCAAATGAATTAGGATATCTTACCTGGAAAAGATATCCTTTTAAGTGTTTGCCACCAATTTTTCAGCCGGACAAACTTGTTGAGTTAGACCTACATGGGGGAAGTATTCAATGA 1761 0.3788 MASNTIIQYTSSSSHVKRTYDIFVSFRGEDTRNNFTGFLLEAFRRKGIDAFEDDKDIKKSESIALELLQAIEGSRIFIVVFSKNYASSTWCLCELAEICNCIETSPSHVLPIFYDVDSSEVQKQSGCYEKAFTEYEERFREDEEKMEEVQRWREALTRVANLSGWDIGNKPQYAEVEVIVQNIRNILGPKISCLPNEDLVGIESRVEELAKLLCLGSINDVRVVGICGMGGIGKMTHAVLYMKESLIDMIFIVLLMMLRNARALILLDNVDQIEQLEMFIGNRQTLLLGCLGGRSRIIVISRDEHILRTHGMDDVYQVQPLNEENAVQLFCRNAFKGNYIMSDYEKMTRDVLSHAQGHPLAIAVIGSSLFGRNVSQWRSALARVRDNKSKNIMDVMRISFYELDDVDKEIFLDIACFFSGYEEPYVKEVLDFCGIHPEYGLQVLVDKSLITVKYGMIVMHSMLKDLGRCIVREKSPKEPMKWSRLWDYQDLHKVILDNLVTENLEAIVVLRKSPVIYETIMRADALSKMNHLKLLQLEMVNFLGSLNYLSNELGYLTWKRYPFKCLPPIFQPDKLVELDLHGGSIQ 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00419 586 ProSiteProfiles TIR domain profile. 18 187 IPR000157 GO:0007165
Pumo3g00419 586 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 188 - -
Pumo3g00419 586 SUPERFAMILY "Winged helix" DNA-binding domain 391 494 IPR036390 -
Pumo3g00419 586 Pfam TIR domain 20 170 IPR000157 GO:0007165
Pumo3g00419 586 Gene3D - 249 315 IPR027417 -
Pumo3g00419 586 Gene3D - 191 248 IPR027417 -
Pumo3g00419 586 Gene3D - 17 190 IPR035897 -
Pumo3g00419 586 PRINTS Disease resistance protein signature 223 238 - -
Pumo3g00419 586 PRINTS Disease resistance protein signature 355 369 - -
Pumo3g00419 586 PRINTS Disease resistance protein signature 527 543 - -
Pumo3g00419 586 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 585 IPR044974 GO:0006952
Pumo3g00419 586 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 414 IPR027417 -
Pumo3g00419 586 Pfam NB-ARC domain 255 390 IPR002182 GO:0043531
Pumo3g00419 586 SMART till_3 19 162 IPR000157 GO:0007165
Pumo3g00419 586 Gene3D - 320 404 IPR042197 -
Pumo3g00419 586 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 165 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00419 Pumo-Chr3 5990115 5992436 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00419 18 580 WRKY Transcription Factor Family AT4G12020 26.849 9.90e-52 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00419 - - vra:106780741 739.569