Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00418 ATGATTGAAGAGACAAATTCTATAAAAGTGTCAAATTTTGCACCCTTCGTGGCCAATAAAGACAGATACGCGGATGTTCCAGAAGGACCACCGCATCTCAATAAACAACGTTCTATTAGCACCAACCCCAAACTCTCTCTGTCTCTGCAATCAATAAATTTAAAAGCAAACATTATTATTATTCTTCTTCTTCTCATCAACATCATCATTATTGTCGACGCAAGACACTCGCATTTGCATCTGCCGCGTCGATCGGCAATACACGCGAAGTCCTTCAAATCTTATGGTTCCTACAACAAACATTCTAAAAGGTTTTCCGGCGCCGGAAACACCGATTCCGACCACGAGCAGCTCCCCATTCTCTTCGACCAAGAAACCCACCGCCACAACGCCATGTCCGCCGGTGACTACGTCGTCAAGATCAGCGACGACGGCGGCGACGCCCCCCAGGGCAGCAAGATTTGGCGCGAGTCCAGCTACGATTTCTGGAACGGCGACGGCGCCACCACCACCGCCGCCGGAGGCAGCGACGAGAGCTTCGATTTCCGCCACTCGGAGGACCCGCCCTCGCAGCTGATCGGACGCTTCCTCCACAAGCAGCGGGACTCCGGCGAGATGCAGCTCGACATGGATTTGGAAATGGAGGAGCTCCAGCGCGACGCCGACGACGGAAAGTTGACGCCGGTCGAGGAATCTCCGGTGACGCACCGCGTCTCGAGAGAGCTCAAGGTCTCGTTCGACGAACCCGCTTCCAATGTAAACCTTCTCCTCGAAGCGCAAAACGACGTCGTCAGAAGAAGGAACAGCAAGGACTCGCCATCGTTGTCGGAGTTCCAACGCCCTCCGCAACCGCCGCAATACGACCGTCGCCGGTCTTCCTCACAGTCGCCAGCCGGCGACGGCGAGGTTCTCCGGTGCACCTCGAACGCTTCCTTCGAGAGAAACCTTTCCATGCAGAGAAAATCGGCGTTGTTGAAGGCGAAAACGAGGTCTAGGTTAATGGACCCGCCAGAAGAACTGGACAGAAAATCGGGTCGGGTTTTAAAATCGGGCCAACTCCTATCCGGGTTTTTGGGGAGGAGGAACGATGATGAGGAAGACGATCCGTTTTTGGAAGAGGATCTTCCTGATGAGTTTAAGGAGACTCATTTCAGCTTGTGGACTCTTCTTGAGTGGTTGAGTTTGATTTTGATCATTGGCTTGTTAATAACCACCCTCTGTGTTCCCATTCTGAGAGACAAGGATCTGTGGCAGCTTAGGTTGTGGAAATGGGAGGTTATGGTTTTGGTTTTGATCTGTGGCAGGTTGGTGTCTGATTGGGTTATTAGGATTGCTGTGTTCTGCATTGAGAGGAACTTCCTTTTGAGGAAGAGGGTCTTGTATTTTGTCTATGGTATCAGGAAGGCTGTTCAGAATTGTGTTTGGTTGGGGCTTGTGTTGATTGCGTGGCATTTGTTGTTTGACAAGAGGGTGCAGAGGGAGACACGCAGTGGTTTCCTCGAGTATTTTACTAAGGTGTTGGTGTGTTTCCTTGTGGGGACTTTGGTGTGGTTGTTGAAGACTCTTGTGGTTAAGGTGTTGGCCTCTTCTTTCCATGTGAGTACCTACTTTGATAGGATTCAAGAGTCGCTGTTTAATCAGTTTGTGATTGAGACGCTTTCTGGCCTTCCTTTGGTGGAGATTCAGAAGGCTGAGGAGGAGGAGGAGAGGCTTGCTGATGAGGTTCAGAAGCTGCAGAATGCTGGGGTTACCATACCCCCTGACCTTAGGGCATCTGCTTTTTCTAATATTAAGAGTGGGAGGTTGAGGAGTGGAATGCTGTCCAAAAGCCCCAGAGTTAAGAGTGGCAAGTTTTCGCGGCCGCTTTCCAAGAAGTCCGAAGAGGTGAATGTGATCACTATGGATAACCTGCATAAGCTGAATCCCAATAATATCTCTGCCTGGAATATGAAAAGGTTGATGAACATGGTCCGACATGGGGCTCTTACTACCCTGGATGAACACATACTTGATAACGCGAATGATGATGAGAATGCCACGCAAATTAGAAGTGAAAACGAGGCAAAAGCTGCAGCTAAGAAAATATTTCAAAATGTTGCTAGGCGCGGGTGCAGGTATATATACCCAGATGACTTGATGCGGTTTATGCGAGAAGATGAAGCTGCAAAGACCATGAATCTCTTTGAAGGAGCGTCTGATTCTGGGAGAATCAGCAAATCAGCCTTGAAGAACTGGGTGGTCAATGCCTTCAGGGAAAGGAGAGCACTTGCTTTGACATTGAATGACACGAAAACGGCTGTGAACAAACTTCATCGAATGCTCAATTTTATAGTTGCAATTGTCATAGTGGTTATTTGGCTCTTGATATTGGAACTTGCCACCACCAAATTTCTTCTCTTTGTGAGCTCACAGATTGTCGTGGTTGCATTTATATTTGGAAACACCTGCAAGACCATATTTGAAGCGATTATTTTCTTATTTGTCATGCACCCATTTGATGTGGGAGATAGGTGTGACATTGATGGGGTTCAGATGGTGGTAGAAGAAATGAACATATTGACAACCATATTTCTGAGATTTGATAATCAAAAGGTCATCATCCCTAACAATGTCCTTGCTACCAAGGCCATACATAACTATTACCGGAGTCCTGACATGGGAGATGCTATCGAATTCTATATACATGTAGCTACCCCAGTTGAAAAGATTTCAGTCATTAAACACAGAATACAAAGTTACATTGATAACAAGAAGGAGCACTGGTATCCTTCACCTTTAATTGTAATAAGGGATTATGACCAACTAAACATGTTTAAAATGGCTATCTGGCCAACTCATAGAATGAACTTCCAAGACATGGGAGAAAGGTTTGTGAGGAGATCCCTTTTGCTTGAAGAGATGTTAAAGATTTTCAGGGAGCTTGACATTAATTACCGTCTCTTGCCCCTGGACATTAACGTGAGAGCCACGCCTACCTCTTCTGATCGGCTTCCACCTAGTTGGGCATCAGTTCCAAGTTGA 3021 0.4717 MIEETNSIKVSNFAPFVANKDRYADVPEGPPHLNKQRSISTNPKLSLSLQSINLKANIIIILLLLINIIIIVDARHSHLHLPRRSAIHAKSFKSYGSYNKHSKRFSGAGNTDSDHEQLPILFDQETHRHNAMSAGDYVVKISDDGGDAPQGSKIWRESSYDFWNGDGATTTAAGGSDESFDFRHSEDPPSQLIGRFLHKQRDSGEMQLDMDLEMEELQRDADDGKLTPVEESPVTHRVSRELKVSFDEPASNVNLLLEAQNDVVRRRNSKDSPSLSEFQRPPQPPQYDRRRSSSQSPAGDGEVLRCTSNASFERNLSMQRKSALLKAKTRSRLMDPPEELDRKSGRVLKSGQLLSGFLGRRNDDEEDDPFLEEDLPDEFKETHFSLWTLLEWLSLILIIGLLITTLCVPILRDKDLWQLRLWKWEVMVLVLICGRLVSDWVIRIAVFCIERNFLLRKRVLYFVYGIRKAVQNCVWLGLVLIAWHLLFDKRVQRETRSGFLEYFTKVLVCFLVGTLVWLLKTLVVKVLASSFHVSTYFDRIQESLFNQFVIETLSGLPLVEIQKAEEEEERLADEVQKLQNAGVTIPPDLRASAFSNIKSGRLRSGMLSKSPRVKSGKFSRPLSKKSEEVNVITMDNLHKLNPNNISAWNMKRLMNMVRHGALTTLDEHILDNANDDENATQIRSENEAKAAAKKIFQNVARRGCRYIYPDDLMRFMREDEAAKTMNLFEGASDSGRISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFIVAIVIVVIWLLILELATTKFLLFVSSQIVVVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCDIDGVQMVVEEMNILTTIFLRFDNQKVIIPNNVLATKAIHNYYRSPDMGDAIEFYIHVATPVEKISVIKHRIQSYIDNKKEHWYPSPLIVIRDYDQLNMFKMAIWPTHRMNFQDMGERFVRRSLLLEEMLKIFRELDINYRLLPLDINVRATPTSSDRLPPSWASVPS 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00418 1006 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 124 1001 IPR016688 -
Pumo3g00418 1006 SUPERFAMILY Sm-like ribonucleoproteins 821 880 IPR010920 -
Pumo3g00418 1006 FunFam Predicted mechanosensitive ion channel 831 880 - -
Pumo3g00418 1006 MobiDBLite consensus disorder prediction 264 304 - -
Pumo3g00418 1006 Gene3D - 831 880 IPR023408 -
Pumo3g00418 1006 MobiDBLite consensus disorder prediction 286 304 - -
Pumo3g00418 1006 Coils Coil 558 581 - -
Pumo3g00418 1006 PIRSF Memb_At2g17000 122 1006 IPR016688 -
Pumo3g00418 1006 Pfam Mechanosensitive ion channel 773 976 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00418 Pumo-Chr3 5965344 5981840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00418 136 1006 Mechanosensitive Ion Channel Family AT1G78610 56.876 0.0 941
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00418 K22048 - gmx:100789882 1530